View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_2 (Length: 644)
Name: NF15183_low_2
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_2 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 644
Target Start/End: Complemental strand, 9586507 - 9585878
Alignment:
| Q |
16 |
tcagtggcatcttcaagaaagataatagcattatttgagtgacagaaagaagaaactcttctcgtgtcaaggatgcattgtttgctagcatcctatgaat |
115 |
Q |
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| T |
9586507 |
tcagtggcatcttcaagaaagataatagcattatttgagtgacagaaagaagaaacccttctcgtgtcaaggatgcattgtttgctagcatcctatgaat |
9586408 |
T |
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| Q |
116 |
attgtcctttaaattcgaagatgttttatggatttcccccctcaaaatgtggttgaggggggaaa-tcgatgcatgaagtttgattgttaaatttacaac |
214 |
Q |
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| T |
9586407 |
attgtgctttaaattcgaagatgttttatggcttccccccctcaaaatgtggttgatgatcaaaaatagaggcatgaagtttgattgttaaatttacaac |
9586308 |
T |
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| Q |
215 |
tatttatttaaatttaaaaatgatatttgttttagtaggcttaatgataatgttgttatttttgttgtttgttatggttcttctagttgatgctcttggt |
314 |
Q |
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| T |
9586307 |
tatttatttaaatttaaagatgatatttgttttagtaggcttaatgataatgttgttatttttgttgtttgttatggttcttctagttgatgctcttggt |
9586208 |
T |
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| Q |
315 |
tctttctatgacttaagttatagtctttaattagtatttggatgttgcatagtcttagttttttgggtgcataaaaatatgtttacaattgcacttgggt |
414 |
Q |
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| T |
9586207 |
tctttctatgacttaagttatagtctttaattagtatttggatgttgcatagtcttagttttttgcgtgcataaaaatatgtttacgattgcacttgggt |
9586108 |
T |
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| Q |
415 |
gttgtttcataacatgaatgcatacacattttagnnnnnnnnnnnnctttctttcttccatatcagtgttctacctttctttcttcaaagctccggcagg |
514 |
Q |
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| T |
9586107 |
gttgtttcataacatgaatgcatacacattttagtttttttcttttctttctttcttccataccagtgttctacctttctttcttcaaagctccggcagg |
9586008 |
T |
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| Q |
515 |
tannnnnnnctaaactagaatctcttttaaagcaatttttgtggggtaggtatcatgatagtaggagagtgaatggggtaaattgggacaaggtttttaa |
614 |
Q |
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| T |
9586007 |
ta-ttttttctaaactagaatctcttttaaagcaatttttgtggggtaggtatcatgagagtaggagagtgaattgggtcaattgggacaaggtttttaa |
9585909 |
T |
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| Q |
615 |
-gataaggaaatgatcatggaggttgagaac |
644 |
Q |
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| T |
9585908 |
ggataaggaaatgatcatggaggttgagaac |
9585878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 31 - 343
Target Start/End: Complemental strand, 9580910 - 9580595
Alignment:
| Q |
31 |
agaaagataatagcattatttgagtgacagaaagaagaaactcttctcgtgtcaaggatgcattgtttgctagcatcctatgaatattgtcctttaaatt |
130 |
Q |
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| T |
9580910 |
agaaagataatagcattatttgagtgacagaaagaagaaaatcttctcgtgtcaaggatgcattgtttgctagcatcctaaaaatatcatgctttgaatt |
9580811 |
T |
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| Q |
131 |
cgaagatgttttatggatttc-ccccctcaaaatgtggttgaggggggaaatcgat--gcatgaagtttgattgttaaatttacaactatttatttaaat |
227 |
Q |
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| T |
9580810 |
ctaagatgctttatgggtttttccccctcaaaatgtagttgacgactcaaaaatataggcatgaagtttgattgttaaatttataactatttatttaaat |
9580711 |
T |
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| Q |
228 |
ttaaaaatgatatttgttttagtaggcttaatgataatgttgttatttttgttgtttgttatggttcttctagttgatgctcttggttctttctatgact |
327 |
Q |
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| T |
9580710 |
ttaaagatgatatttgttttagtaggcttaatgataattttgttatttttgctgtttgttatggttcttctagttgatgctcttggttctttttatgagt |
9580611 |
T |
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| Q |
328 |
taagttatagtcttta |
343 |
Q |
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| T |
9580610 |
taagttatagtcttta |
9580595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 43634010 - 43633964
Alignment:
| Q |
48 |
atttgagtgacagaaagaagaaactcttctcgtgtcaaggatgcatt |
94 |
Q |
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| T |
43634010 |
atttgagtgacaaaaagaagaaactcttcttgcatcaaggatgcatt |
43633964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 37983 - 37932
Alignment:
| Q |
245 |
tttagtaggcttaatgataatgttgtt-atttttgttgtttgttatggttct |
295 |
Q |
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| T |
37983 |
tttaggaggcttaatgataatgttgttcatttttgttgtttgttatggttct |
37932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 55505391 - 55505444
Alignment:
| Q |
48 |
atttgagtgacagaaagaagaaactcttctcgtgtcaaggatgcattgtttgct |
101 |
Q |
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| T |
55505391 |
atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct |
55505444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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