View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_21 (Length: 253)
Name: NF15183_low_21
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 45393879 - 45394104
Alignment:
| Q |
10 |
ataattctattctagggcatgacactttgcttcatgtcaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt |
109 |
Q |
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| T |
45393879 |
ataattctattctagggcatgacactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt |
45393978 |
T |
|
| Q |
110 |
caagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45393979 |
caagctgatcactactcatatcatcaattgaatcattccaccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttc |
45394078 |
T |
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| Q |
210 |
cgtctccaacatcttttgtgcctcct |
235 |
Q |
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|||||||||||||||||||||||||| |
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| T |
45394079 |
cgtctccaacatcttttgtgcctcct |
45394104 |
T |
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Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 52740460 - 52740601
Alignment:
| Q |
10 |
ataattctattctagggcatgacactttgcttcatgtcaagttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgtt |
109 |
Q |
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|||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
52740460 |
ataattctattctacggcatggcactttgcttcatgacaagttcatcagccctttcaacaagcttcctccttaactcataaatggatatcataaattgtt |
52740559 |
T |
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| Q |
110 |
caagctgatcactactcatatcatcaattgaatcattccacc |
151 |
Q |
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| T |
52740560 |
caagttgatcactactcatatcatcaattgaatcattccacc |
52740601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 124 - 234
Target Start/End: Original strand, 52740601 - 52740714
Alignment:
| Q |
124 |
ctcatatcatcaattgaatcattccaccagtcacc---cttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaaca |
220 |
Q |
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| T |
52740601 |
ctcatatcatcaattgaatcattccaccaatcaccacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccatctccaaca |
52740700 |
T |
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| Q |
221 |
tcttttgtgcctcc |
234 |
Q |
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|||||||||||||| |
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| T |
52740701 |
tcttttgtgcctcc |
52740714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 13539187 - 13539259
Alignment:
| Q |
80 |
ttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccacca |
152 |
Q |
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| T |
13539187 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccacca |
13539259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 13539272 - 13539330
Alignment:
| Q |
177 |
caaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcct |
235 |
Q |
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||||||||||||||| ||||||||||||| |||| ||||||||| ||| |||||||| |
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| T |
13539272 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcct |
13539330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 35782431 - 35782246
Alignment:
| Q |
50 |
gttcatcagccctttcaacaagcttcctccttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattcca |
149 |
Q |
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||||||||||| |||||| ||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||| || |||||||| |
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| T |
35782431 |
gttcatcagccttttcaagtagcttcctctttaactcagaaatggactccataaattcttcaagctgatcactattcatctcatcaatagattcattcca |
35782332 |
T |
|
| Q |
150 |
ccagtcacccttgttgaaaatcttagccaaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcct |
235 |
Q |
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| T |
35782331 |
ccagttacccatattccaaatcttagtcaaattttcaacatcagcaagtttctgtttttccatttccaacacctttagtgcctcct |
35782246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 47836428 - 47836359
Alignment:
| Q |
89 |
aaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccaccagtcacc |
158 |
Q |
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| T |
47836428 |
aaatggacaccataaattgttcaagcacttcactactcatattgtcaattgaatcattccaccaatcacc |
47836359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 9668163 - 9668235
Alignment:
| Q |
80 |
ttaactcgtaaatggacaccataaattgttcaagctgatcactactcatatcatcaattgaatcattccacca |
152 |
Q |
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||||||| | |||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
9668163 |
ttaactctttaatggattccataaattgttcaagctcttcaatactcatatcatcaatggaatcattccacca |
9668235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 9668248 - 9668306
Alignment:
| Q |
177 |
caaattttgaacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcct |
235 |
Q |
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||||||||||||||| ||||||||||||| |||| ||||||||| ||| |||||||| |
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| T |
9668248 |
caaattttgaacatcggctagtttcttcttctccgactccaacatttttaatgcctcct |
9668306 |
T |
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