View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_23 (Length: 248)
Name: NF15183_low_23
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 52740335 - 52740100
Alignment:
| Q |
1 |
ttcattctttgttagggttcttttgttttaatctgcactttttatactgcagttgagattttgtttaatggtaatttaatttggatctttttctcacacc |
100 |
Q |
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| T |
52740335 |
ttcattctttgttagggttcttttgttttaatctgcactttttatactgcagttgagattttgtttaatggtaatttaatttggatctttttctcacacc |
52740236 |
T |
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| Q |
101 |
atatgcttatttgaa-tannnnnnnnaatagtgacatcatgatcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattcta |
199 |
Q |
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| T |
52740235 |
atatgcttatttgaatttttttttttaatagtgacatcatgatcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattcta |
52740136 |
T |
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| Q |
200 |
cacgacgtctccaaatgacatatggtattcatcgat |
235 |
Q |
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| T |
52740135 |
cacgacgtctccaaatgacatatggtattcatcgat |
52740100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 52740392 - 52740359
Alignment:
| Q |
32 |
tctgcactttttatactgcagttgagattttgtt |
65 |
Q |
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| T |
52740392 |
tctgcactttttttactgcagttgagattttgtt |
52740359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 35782578 - 35782629
Alignment:
| Q |
63 |
gtttaatggtaatttaatttggatctttttctcacaccatatgcttatttga |
114 |
Q |
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| T |
35782578 |
gtttaatggtaattttatttggatgtttttctcacaccatgtgcttatttga |
35782629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 45393676 - 45393585
Alignment:
| Q |
141 |
atcttttcctataaaattatttctgaggattaagatatgtatatttggaattgattctacacgacgtctccaaatgacatatggtattcatc |
232 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||| ||| |||||||| ||| |||||||| ||||| | ||||||||||| |
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| T |
45393676 |
atcttttcctgtaaaattattaccgaggattaagatatgtatgtttcaaattgattttacttgacgtctctaaatgttttgtggtattcatc |
45393585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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