View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_low_28 (Length: 222)

Name: NF15183_low_28
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_low_28
NF15183_low_28
[»] chr8 (26 HSPs)
chr8 (88-222)||(11174365-11174499)
chr8 (92-222)||(2540073-2540203)
chr8 (88-222)||(3585452-3585586)
chr8 (88-222)||(40058445-40058579)
chr8 (88-222)||(11646467-11646601)
chr8 (88-222)||(37345572-37345706)
chr8 (88-222)||(43275541-43275673)
chr8 (88-222)||(7146914-7147048)
chr8 (88-222)||(40918873-40919005)
chr8 (94-222)||(30999665-30999791)
chr8 (88-222)||(36068081-36068215)
chr8 (88-219)||(27034998-27035128)
chr8 (88-219)||(20546434-20546563)
chr8 (92-219)||(28562426-28562554)
chr8 (145-219)||(13881099-13881174)
chr8 (83-140)||(41307961-41308018)
chr8 (88-140)||(8697898-8697950)
chr8 (88-140)||(40486453-40486505)
chr8 (88-140)||(45278701-45278753)
chr8 (135-219)||(28326802-28326883)
chr8 (92-140)||(10646597-10646645)
chr8 (135-222)||(37510314-37510401)
chr8 (89-215)||(35866616-35866742)
chr8 (92-219)||(28567924-28568051)
chr8 (92-219)||(28575517-28575644)
chr8 (146-219)||(10181002-10181074)
[»] chr3 (31 HSPs)
chr3 (88-222)||(13364844-13364978)
chr3 (88-222)||(198856-198990)
chr3 (88-222)||(19241810-19241944)
chr3 (88-222)||(46694252-46694386)
chr3 (88-222)||(23088073-23088207)
chr3 (88-221)||(29375139-29375272)
chr3 (88-222)||(36881283-36881415)
chr3 (88-222)||(3383077-3383211)
chr3 (88-219)||(43750138-43750269)
chr3 (94-191)||(32835129-32835226)
chr3 (88-208)||(13702770-13702890)
chr3 (88-165)||(27707363-27707440)
chr3 (146-219)||(37780996-37781069)
chr3 (88-140)||(19911510-19911562)
chr3 (88-140)||(12094583-12094635)
chr3 (139-219)||(19897072-19897152)
chr3 (137-215)||(44522491-44522567)
chr3 (88-172)||(37293438-37293522)
chr3 (88-140)||(44277455-44277507)
chr3 (104-172)||(48820444-48820512)
chr3 (153-216)||(17755221-17755284)
chr3 (153-216)||(19056541-19056604)
chr3 (88-140)||(38805246-38805298)
chr3 (88-158)||(48963157-48963225)
chr3 (94-172)||(53559802-53559880)
chr3 (138-215)||(1455297-1455374)
chr3 (147-208)||(34294527-34294588)
chr3 (96-140)||(4235760-4235803)
chr3 (88-128)||(19912174-19912214)
chr3 (83-115)||(27334727-27334759)
chr3 (88-128)||(38806341-38806381)
[»] chr7 (16 HSPs)
chr7 (88-222)||(10981509-10981643)
chr7 (89-222)||(36453266-36453399)
chr7 (88-222)||(27813812-27813946)
chr7 (88-222)||(40348961-40349095)
chr7 (88-222)||(47110452-47110584)
chr7 (88-222)||(25614495-25614627)
chr7 (135-219)||(3091565-3091649)
chr7 (147-219)||(27942184-27942256)
chr7 (135-219)||(7743542-7743625)
chr7 (88-140)||(25060133-25060185)
chr7 (145-222)||(3498896-3498973)
chr7 (96-216)||(16360393-16360511)
chr7 (137-219)||(37983206-37983284)
chr7 (88-140)||(2911548-2911600)
chr7 (137-215)||(16662146-16662222)
chr7 (137-215)||(17636506-17636582)
[»] chr6 (18 HSPs)
chr6 (88-222)||(1605580-1605714)
chr6 (88-222)||(29260193-29260327)
chr6 (88-222)||(8626483-8626617)
chr6 (94-222)||(30734625-30734753)
chr6 (88-222)||(13757209-13757343)
chr6 (88-222)||(7761302-7761434)
chr6 (88-215)||(15064843-15064970)
chr6 (102-221)||(31559879-31559998)
chr6 (88-219)||(8235625-8235756)
chr6 (88-222)||(17942444-17942580)
chr6 (88-222)||(4129436-4129562)
chr6 (93-202)||(30734772-30734879)
chr6 (138-219)||(21277579-21277659)
chr6 (88-140)||(19996715-19996767)
chr6 (135-217)||(3798151-3798233)
chr6 (136-222)||(14287038-14287123)
chr6 (138-219)||(11370630-11370711)
chr6 (88-128)||(19996323-19996363)
[»] chr4 (24 HSPs)
chr4 (88-222)||(25704652-25704786)
chr4 (88-221)||(21310426-21310559)
chr4 (88-222)||(21661677-21661811)
chr4 (88-222)||(24706389-24706523)
chr4 (88-222)||(12071562-12071696)
chr4 (88-222)||(14261045-14261179)
chr4 (88-222)||(21670441-21670575)
chr4 (88-222)||(22321409-22321543)
chr4 (88-222)||(34324724-34324859)
chr4 (88-222)||(40122627-40122761)
chr4 (88-222)||(44568838-44568972)
chr4 (94-222)||(50767871-50767999)
chr4 (89-219)||(31892240-31892366)
chr4 (88-215)||(20249162-20249288)
chr4 (117-202)||(1988065-1988150)
chr4 (135-219)||(20714493-20714577)
chr4 (138-222)||(32543532-32543615)
chr4 (137-219)||(6129093-6129175)
chr4 (88-216)||(26676714-26676842)
chr4 (114-219)||(19692750-19692855)
chr4 (114-219)||(19703335-19703440)
chr4 (135-219)||(48652268-48652351)
chr4 (147-210)||(34284171-34284234)
chr4 (158-199)||(18507428-18507469)
[»] chr2 (15 HSPs)
chr2 (84-222)||(23366786-23366924)
chr2 (88-222)||(3518909-3519043)
chr2 (88-222)||(39938171-39938305)
chr2 (88-222)||(1102504-1102638)
chr2 (88-214)||(37673887-37674013)
chr2 (88-215)||(12969888-12970015)
chr2 (115-222)||(1646317-1646422)
chr2 (164-222)||(22388277-22388335)
chr2 (146-219)||(14779838-14779909)
chr2 (88-140)||(34224378-34224430)
chr2 (135-195)||(35179104-35179164)
chr2 (97-219)||(1002875-1002997)
chr2 (138-219)||(32840317-32840401)
chr2 (135-219)||(18078104-18078188)
chr2 (135-215)||(19976380-19976459)
[»] chr1 (34 HSPs)
chr1 (88-222)||(321627-321761)
chr1 (88-222)||(23045421-23045555)
chr1 (88-222)||(40783799-40783933)
chr1 (88-222)||(284334-284468)
chr1 (88-215)||(24772054-24772181)
chr1 (83-219)||(23526236-23526372)
chr1 (87-215)||(27211113-27211241)
chr1 (88-222)||(47037994-47038126)
chr1 (94-219)||(46771644-46771769)
chr1 (115-215)||(33082773-33082873)
chr1 (102-219)||(52037267-52037382)
chr1 (137-215)||(1749357-1749435)
chr1 (88-216)||(40261419-40261548)
chr1 (88-140)||(3943061-3943113)
chr1 (88-140)||(9588671-9588723)
chr1 (88-140)||(41959079-41959131)
chr1 (88-219)||(51064898-51065032)
chr1 (138-215)||(1837978-1838053)
chr1 (135-215)||(31003935-31004012)
chr1 (146-219)||(18396754-18396827)
chr1 (88-140)||(13984991-13985043)
chr1 (146-221)||(7765072-7765147)
chr1 (135-209)||(3657125-3657199)
chr1 (147-212)||(40562733-40562797)
chr1 (135-219)||(52478016-52478098)
chr1 (88-128)||(44227849-44227889)
chr1 (137-219)||(27143156-27143239)
chr1 (158-219)||(31061599-31061659)
chr1 (135-219)||(34458868-34458950)
chr1 (83-140)||(44228228-44228285)
chr1 (88-128)||(3943763-3943803)
chr1 (83-115)||(6766368-6766400)
chr1 (101-153)||(40564241-40564293)
chr1 (88-128)||(41959809-41959849)
[»] scaffold1431 (1 HSPs)
scaffold1431 (88-222)||(41-175)
[»] chr5 (17 HSPs)
chr5 (88-222)||(12806995-12807129)
chr5 (88-222)||(25773650-25773784)
chr5 (88-222)||(30720634-30720768)
chr5 (88-222)||(40886752-40886886)
chr5 (88-222)||(10285199-10285333)
chr5 (88-222)||(36561241-36561375)
chr5 (83-219)||(37900769-37900905)
chr5 (98-219)||(7277567-7277688)
chr5 (125-215)||(25683377-25683467)
chr5 (88-221)||(16983259-16983393)
chr5 (135-222)||(30403103-30403191)
chr5 (88-219)||(39070884-39071015)
chr5 (90-219)||(734483-734611)
chr5 (137-212)||(23098386-23098461)
chr5 (88-136)||(15305216-15305264)
chr5 (92-219)||(11319564-11319691)
chr5 (147-219)||(1056427-1056498)
[»] scaffold0054 (1 HSPs)
scaffold0054 (88-215)||(45455-45582)
[»] scaffold1770 (1 HSPs)
scaffold1770 (88-222)||(171-297)
[»] scaffold0062 (1 HSPs)
scaffold0062 (102-219)||(410-525)
[»] scaffold0505 (1 HSPs)
scaffold0505 (13-86)||(4416-4489)
[»] scaffold0056 (1 HSPs)
scaffold0056 (137-219)||(70874-70956)
[»] scaffold0257 (1 HSPs)
scaffold0257 (88-140)||(23468-23520)
[»] scaffold0025 (1 HSPs)
scaffold0025 (153-219)||(65308-65375)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 11174499 - 11174365
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11174499 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 11174400  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  11174399 ctataatacccttaatcatttattatttcatttta 11174365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 2540203 - 2540073
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctat 191  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2540203 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 2540104  T
Q  192 aatacctttaatcatttattatttcatttta 222  Q
    |||||| ||||||||||||||||||||||||    
T  2540103 aatacccttaatcatttattatttcatttta 2540073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 3585452 - 3585586
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  3585452 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 3585551  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  3585552 ctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 40058579 - 40058445
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40058579 actccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40058480  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  40058479 ctataatacccttaatcatttattatttcatttta 40058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 11646601 - 11646467
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11646601 actcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 11646502  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  11646501 ctataatacccttaatcatttattatttcatttta 11646467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 37345572 - 37345706
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  37345572 actccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgtttt 37345671  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  37345672 ctataatacccttaatcatttattatttcatttta 37345706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 43275673 - 43275541
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  43275673 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgtttt 43275576  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  43275575 ctataatacccttaatcatttattatttcatttta 43275541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 7146914 - 7147048
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7146914 actccttccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 7147013  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
     ||||||||| ||||||||||||||||||||||||    
T  7147014 ttataatacccttaatcatttattatttcatttta 7147048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 40919005 - 40918873
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |  ||||||||||    
T  40919005 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaaca--tgtgtgtttt 40918908  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  40918907 ctataatacccttaatcatttattatttcatttta 40918873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 30999791 - 30999665
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataa 193  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 30999694  T
Q  194 tacctttaatcatttattatttcatttta 222  Q
    |||| ||||||||||||||||||||||||    
T  30999693 tacccttaatcatttattatttcatttta 30999665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 36068081 - 36068215
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| || ||||| ||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  36068081 actccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgtttt 36068180  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||| ||||||||||||||    
T  36068181 ctataatacccttaatcattaattatttcatttta 36068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 27034998 - 27035128
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| |||| |||    
T  27034998 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtg-ttt 27035096  T
Q  188 ctataatacctttaatcatttattatttcatt 219  Q
    |||||||||| |||| ||||||||||||||||    
T  27035097 ctataatacccttaaccatttattatttcatt 27035128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 20546563 - 20546434
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||| |||||||||| |||| ||||||| ||||||||||  || |||||||  ||||||||||| ||||||||||||||| ||  ||||||||||    
T  20546563 actccctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaatta--tgtgtgtttt 20546466  T
Q  188 ctataatacctttaatcatttattatttcatt 219  Q
     ||| ||||| ||||  |||||||||||||||    
T  20546465 atatgatacccttaacaatttattatttcatt 20546434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 28562426 - 28562554
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtg-tgttttcta 190  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||  |||||| || ||||||||| || | ||||||||||||| | | |||| | |||||||    
T  28562426 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttttcta 28562525  T
Q  191 taatacctttaatcatttattatttcatt 219  Q
    ||||||| ||| |||||||| ||||||||    
T  28562526 taatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 13881174 - 13881099
Alignment:
Q  145 caaataaattttattatttttgatgaaaatatgtgtgtgtttt-ctataatacctttaatcatttattatttcatt 219  Q
    |||||||||||| ||||||||||||||| | |||| || |||| |||||||||| |||||||||||||||||||||    
T  13881174 caaataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcatt 13881099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 41308018 - 41307961
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  41308018 catatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 8697950 - 8697898
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  8697950 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 40486505 - 40486453
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  40486505 actccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 45278753 - 45278701
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  45278753 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 28326883 - 28326802
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||   ||||| |||||||  ||||  |||||||||||||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcatt 28326802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 10646597 - 10646645
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  10646597 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 37510314 - 37510401
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||| |||||||| || ||| | | | | | ||||| |||||||| ||||||||||| ||||||||||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcatttta 37510401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 35866616 - 35866742
Alignment:
Q  89 ctccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttc 188  Q
    |||| ||||||||| ||||| ||| ||||||  |||||||  |   |||||||||  | |||||| || |||||||| |||||| | | ||||| |||||    
T  35866616 ctccttccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgttttttc 35866715  T
Q  189 tataatacctttaatcatttattattt 215  Q
    ||||||||| |||| ||||||||||||    
T  35866716 tataatacccttaaacatttattattt 35866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 28567924 - 28568051
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgt-gttttcta 190  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||  |||||  || ||||||||| || | |||||| |||||| | | |||||  |||||||    
T  28567924 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28568023  T
Q  191 taatacctttaatcatttattatttcatt 219  Q
    |||||||  |  |||||||||||||||||    
T  28568024 taatacc-ctgctcatttattatttcatt 28568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 28575517 - 28575644
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgt-gttttcta 190  Q
    ||||||||||||||||| ||| ||||||| ||||||| |||  |||||  || ||||||||| || | |||||| |||||| | | |||||  |||||||    
T  28575517 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28575616  T
Q  191 taatacctttaatcatttattatttcatt 219  Q
    |||||||  |  |||||||||||||||||    
T  28575617 taatacc-ctgctcatttattatttcatt 28575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 10181074 - 10181002
Alignment:
Q  146 aaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||| |||||||| || ||| || || ||| |||| ||||||||| |||| ||||||||||||||||    
T  10181074 aaataaattttgttattttttataaaattacgtttgtttttt-tataataccgttaaccatttattatttcatt 10181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 13364844 - 13364978
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13364844 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 13364943  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  13364944 ctataatacccttaatcatttattatttcatttta 13364978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 198856 - 198990
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  198856 actccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 198955  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  198956 ctataatacccttaatcatttattatttcatttta 198990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 19241944 - 19241810
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  19241944 actccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 19241845  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  19241844 ctataatacccttaatcatttattatttcatttta 19241810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 46694386 - 46694252
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46694386 actccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 46694287  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  46694286 ctataatacccttaatcatttattatttcatttta 46694252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 23088207 - 23088073
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||||||| ||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23088207 actccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 23088108  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  23088107 ctataatacccttaatcatttattatttcatttta 23088073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 29375139 - 29375272
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29375139 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgtttt 29375238  T
Q  188 ctataatacctttaatcatttattatttcatttt 221  Q
    |||||||||| |||| ||||||||||||| ||||    
T  29375239 ctataatacccttaaccatttattatttcttttt 29375272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 36881283 - 36881415
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  36881283 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgtttt 36881380  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||| ||||||||||||||||||    
T  36881381 ctataatacccttaattatttattatttcatttta 36881415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 3383077 - 3383211
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| |||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3383077 actccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 3383176  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| |||| |||||||||||||||||||    
T  3383177 ctataatacccttaaacatttattatttcatttta 3383211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 43750138 - 43750269
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||| ||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  43750138 actcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgtttt 43750237  T
Q  188 ctataatacctttaatcatttattatttcatt 219  Q
    |||||||||  |||| ||||||||||||||||    
T  43750238 ctataatacacttaaccatttattatttcatt 43750269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 32835226 - 32835129
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctat 191  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 13702770 - 13702890
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||| ||| ||||||||||   |||||| |||||||||| ||||||||||||||||||||||||  |||||||||||||| ||| ||| ||||||    
T  13702770 actccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatgtttgtttt 13702869  T
Q  188 ctataatacctttaatcattt 208  Q
    ||||||||||||||| |||||    
T  13702870 ctataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 165
Target Start/End: Complemental strand, 27707440 - 27707363
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattattttt 165  Q
    |||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||    
T  27707440 actccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 37780996 - 37781069
Alignment:
Q  146 aaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||||||  |||| ||||||||||||||||    
T  37780996 aaataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 19911510 - 19911562
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  19911510 actccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 12094583 - 12094635
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  12094583 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 19897152 - 19897072
Alignment:
Q  139 agaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||| |||||||||||| |||||||| |||||| | | ||||| |||||||||||||| ||| || ||||||||||||||    
T  19897152 agaaatcaaataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcatt 19897072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 44522491 - 44522567
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    ||||||| ||||||||||||||||||||| ||||||  |  ||||| ||||||||||||| ||||| ||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatca--tgtgttttttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 37293438 - 37293522
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaa 172  Q
    ||||||||||||||| ||||| ||| ||||||| ||||||| |||  |||||| || ||||||||| || | |||||||||||||    
T  37293438 actccctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaa 37293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 44277507 - 44277455
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    |||||||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  44277507 actccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  104 aatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaa 172  Q
    |||||||||| |||||| ||||||| |  || |||| |||||||||||||||| |||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 17755221 - 17755284
Alignment:
Q  153 ttttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttc 216  Q
    |||| |||||||| |||||  ||| ||||| |||||||||||| ||||||||||||||||||||    
T  17755221 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatttattatttc 17755284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 19056541 - 19056604
Alignment:
Q  153 ttttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttc 216  Q
    |||| |||||||| |||||  ||| ||||| |||||||||||| ||||||||||||||||||||    
T  19056541 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatttattatttc 19056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 38805246 - 38805298
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||| ||||||||||| ||||||  |||||||||| ||||||||    
T  38805246 actccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 48963157 - 48963225
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttat 158  Q
    ||||||||||||||||||||||| |  |||||| ||||||||  |||||||| ||| ||||||| ||||||    
T  48963157 actccctccgtttcaaaatacatatctattttggagaaattg--ctaaccaataaatcaaataatttttat 48963225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 53559880 - 53559802
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaa 172  Q
    ||||||||| ||||| ||||  ||||| ||||||| |||  | ||||||| ||||||||| || |||||||||||||||    
T  53559880 tccgtttcacaatacttgttgcttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaa 53559802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 1455374 - 1455297
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    |||||| |||||||||||| ||||||||||| ||| ||| ||||| | ||||||||| |  || | ||||||||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 34294527 - 34294588
Alignment:
Q  147 aataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcattt 208  Q
    |||||||||||| || |||||||||||||| ||| | |||||| ||||| ||||||| ||||    
T  34294527 aataaattttatcatatttgatgaaaatatttgtcttttttctgtaataactttaataattt 34294588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 4235760 - 4235803
Alignment:
Q  96 cgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||    
T  4235760 cgtttcaaaatacatgt-cgttttggagaaattgcactaaccaag 4235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 19912214 - 19912174
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  19912214 actccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 27334727 - 27334759
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttca 115  Q
    |||| ||||||||||||||||||||||||||||    
T  27334727 catatactccctccgtttcaaaatacatgttca 27334759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 38806381 - 38806341
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  38806381 actccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 10981509 - 10981643
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10981509 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 10981608  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  10981609 ctataatacccttaatcatttattatttcatttta 10981643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 36453399 - 36453266
Alignment:
Q  89 ctccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttc 188  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttc 36453300  T
Q  189 tataatacctttaatcatttattatttcatttta 222  Q
    ||||||||| ||||||||||||||||||||||||    
T  36453299 tataatacccttaatcatttattatttcatttta 36453266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 27813812 - 27813946
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  27813812 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgtttt 27813911  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  27813912 ctataatacccttaatcatttattatttcatttta 27813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 40348961 - 40349095
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40348961 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40349060  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  40349061 ctataatacccttaatcatttattatttcatttta 40349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 47110452 - 47110584
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  47110452 actccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaata--tgtgtgtttt 47110549  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||| ||||||    
T  47110550 ctataatacccttaatcatttattattttatttta 47110584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 25614627 - 25614495
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||  |||||||    
T  25614627 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgt--gtgtttt 25614530  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    ||  |||||| ||||||||||||||||||||||||    
T  25614529 ctgaaatacccttaatcatttattatttcatttta 25614495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 3091565 - 3091649
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||| ||| |||||||||||| ||||||||||||||| | | ||||| |||||||||||||| |||| ||||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 27942256 - 27942184
Alignment:
Q  147 aataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    |||||||||| |||||||| |||| | ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  27942256 aataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcatt 27942184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 7743625 - 7743542
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||| | |||||||||||| ||||||||||||||| ||||||| |  ||||||||||||| ||||| |||||||||||||||    
T  7743625 accaagatatcaaataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 25060185 - 25060133
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  25060185 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 3498973 - 3498896
Alignment:
Q  145 caaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    ||||| |||||| |||||||| |||||| | | ||| | ||||||||||||| ||||| |||||||||||||||||||    
T  3498973 caaattaattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcatttta 3498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 16360393 - 16360511
Alignment:
Q  96 cgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataata 195  Q
    ||||||| ||||| ||||  |||||  |||||| |||  ||||  ||| |||||||||||| ||||||||||||||| | ||||| |  |||||||||||    
T  16360393 cgtttcataatacttgttgcttttgaggaaattacacataccagaaaatcaaataaattttgttatttttgatgaaattctgtgttt--tttctataata 16360490  T
Q  196 cctttaatcatttattatttc 216  Q
    || |||| |||||||||||||    
T  16360491 cccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 37983206 - 37983284
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||| |||||||||||| ||||||||||||||| | | |||    ||| |||||||||||||| ||||||||||||||||    
T  37983206 caagaaatcaaataaattttgttatttttgatgaaattttatgt----tttttataatacctttaaccatttattatttcatt 37983284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 2911600 - 2911548
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||| ||||||||    
T  2911600 actccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 16662146 - 16662222
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    |||||||  ||||||||||| |||||||||||||||  || ||||| |||| ||||||||| |||| ||||||||||||    
T  16662146 caagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattt 16662222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 17636506 - 17636582
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    |||||||  ||||||||||| |||||||||||||||  || ||||| |||| ||||||||| |||| ||||||||||||    
T  17636506 caagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattt 17636582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 1605580 - 1605714
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1605580 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 1605679  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  1605680 ctataatacccttaatcatttattatttcatttta 1605714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 29260193 - 29260327
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29260193 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 29260292  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  29260293 ctataatacccttaatcatttattatttcatttta 29260327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 8626483 - 8626617
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8626483 actccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 8626582  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  8626583 ctataatacccttaatcatttattatttcatttta 8626617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 30734753 - 30734625
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataa 193  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  194 tacctttaatcatttattatttcatttta 222  Q
    |||| ||||||||||||||||||||||||    
T  30734653 tacccttaatcatttattatttcatttta 30734625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 13757209 - 13757343
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13757209 actctctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 13757308  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||| ||||||||||||||||    
T  13757309 ctataatacccttaatcaattattatttcatttta 13757343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 7761302 - 7761434
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  7761302 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgtttt 7761399  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  7761400 ctataatacccttaatcatttattatttcatttta 7761434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 15064970 - 15064843
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||  ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  15064970 actccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgtttt 15064871  T
Q  188 ctataatacctttaatcatttattattt 215  Q
     |||| |||| |||| ||||||||||||    
T  15064870 ttatactacccttaaccatttattattt 15064843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 31559998 - 31559879
Alignment:
Q  102 aaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataataccttta 201  Q
    ||||||||||| ||||||| |||||||||| ||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccctta 31559899  T
Q  202 atcatttattatttcatttt 221  Q
    ||||||||||||||||||||    
T  31559898 atcatttattatttcatttt 31559879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 8235625 - 8235756
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||  ||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||| ||| |||||||| |||| | ||||||||||||||    
T  8235625 actccctctattttaaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgtttt 8235724  T
Q  188 ctataatacctttaatcatttattatttcatt 219  Q
    |||||||||| |||||||||||||||||||||    
T  8235725 ctataatacccttaatcatttattatttcatt 8235756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 17942444 - 17942580
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttatt--atttttgatgaaaatatgtgtgtgtt 185  Q
    ||||||| ||||||||||||||||| ||||||  |||||||||| ||||||||||||||||||  |||| ||  ||||||||||||| |||||| |||||    
T  17942444 actcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtgtt 17942543  T
Q  186 ttctataatacctttaatcatttattatttcatttta 222  Q
     ||||||||||| |||| |||||||||||||||||||    
T  17942544 ctctataatacccttaaccatttattatttcatttta 17942580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 4129436 - 4129562
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||| | || |||| |||||||||| |||||        ||||||||||| |||||||| |||||||||||||||||||||    
T  4129436 actccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgtttt 4129527  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| |||| |||||||||||||||||||    
T  4129528 ctataatacccttaaccatttattatttcatttta 4129562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 30734879 - 30734772
Alignment:
Q  93 ctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctata 192  Q
    |||||||||||||||||||| ||||||| |||||||||| |||| || ||| |||||||||||| ||||||||||||||| ||  |||||||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaatta--tgtgtgttttctata 30734782  T
Q  193 atacctttaa 202  Q
    ||||| ||||    
T  30734781 atacccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 21277659 - 21277579
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    |||||| |||||||||||| |||||||| |||||||| | ||||| |||||||||||||| ||||| ||||| || ||||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcatt 21277579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 19996767 - 19996715
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    |||||||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  19996767 actccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 3798151 - 3798233
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttca 217  Q
    ||||| ||| |||||||||||| |||||||| |||||  ||| ||||| |||||||||| ||| |||  ||||||||||||||    
T  3798151 accaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 14287038 - 14287123
Alignment:
Q  136 ccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    |||| ||| |||||||||||| |||||||| |||||| | ||||  | |||||||||||||| |||  | |||||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcatttta 14287123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 11370711 - 11370630
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    |||||| |||||||||||| ||||||||||||| | |   ||||| |||| ||||||||  |||| ||||||||||| ||||    
T  11370711 aagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccatt 11370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 19996323 - 19996363
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  19996323 actccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 25704652 - 25704786
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25704652 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 25704751  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  25704752 ctataatacccttaatcatttattatttcatttta 25704786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 21310426 - 21310559
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21310426 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 21310525  T
Q  188 ctataatacctttaatcatttattatttcatttt 221  Q
    |||||||||| |||||||||||||||||||||||    
T  21310526 ctataatacccttaatcatttattatttcatttt 21310559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 21661811 - 21661677
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21661811 actccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 21661712  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    ||||||||||||||| |||||||||||||||||||    
T  21661711 ctataatacctttaaccatttattatttcatttta 21661677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 24706523 - 24706389
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24706523 actccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 24706424  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  24706423 ctataatacccttaatcatttattatttcatttta 24706389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 12071562 - 12071696
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12071562 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 12071661  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  12071662 ctataatacccttaatcatttattatttcatttta 12071696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 14261045 - 14261179
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  14261045 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgtttt 14261144  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||| ||||||||||||||||||    
T  14261145 ctataatacccttaataatttattatttcatttta 14261179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 21670575 - 21670441
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21670575 actccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgtttt 21670476  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    ||||||||||||||| |||||||||||||||||||    
T  21670475 ctataatacctttaaccatttattatttcatttta 21670441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 22321543 - 22321409
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  22321543 actccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 22321444  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  22321443 ctataatacccttaatcatttattatttcatttta 22321409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 34324859 - 34324724
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaat-aaattttattatttttgatgaaaatatgtgtgtgttt 186  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  34324859 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgttt 34324760  T
Q  187 tctataatacctttaatcatttattatttcatttta 222  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34324759 tctataatacccttaatcatttattatttcatttta 34324724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 40122761 - 40122627
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  40122761 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40122662  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| |||| |||||||||||||||||||    
T  40122661 ctataatacccttaaccatttattatttcatttta 40122627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 44568838 - 44568972
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||    
T  44568838 actccttccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 44568937  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  44568938 ctataatacccttaatcatttattatttcatttta 44568972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 50767871 - 50767999
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataa 193  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  50767871 tccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataa 50767970  T
Q  194 tacctttaatcatttattatttcatttta 222  Q
    |||| ||||| ||||||||||||||||||    
T  50767971 tacccttaataatttattatttcatttta 50767999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 31892240 - 31892366
Alignment:
Q  89 ctccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttc 188  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||||||| ||    |||||||||    
T  31892240 ctccctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta----tgtgttttc 31892335  T
Q  189 tataatacctttaatcatttattatttcatt 219  Q
    |||||||||||| | ||||||||||||||||    
T  31892336 tataatacctttgaccatttattatttcatt 31892366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 20249288 - 20249162
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||| |||||||||||||||||||| ||||||| | |||||| | |||||||||||||||||||||||| |||||||||| |||| |||||||||| |||    
T  20249288 actctctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtg-ttt 20249190  T
Q  188 ctataatacctttaatcatttattattt 215  Q
    |||||||||| |||| ||||||||||||    
T  20249189 ctataatacccttaaccatttattattt 20249162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 1988065 - 1988150
Alignment:
Q  117 tttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaa 202  Q
    |||| |||||||||| |||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  1988065 tttggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatacccttaa 1988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 20714577 - 20714493
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtg-ttttctataatacctttaatcatttattatttcatt 219  Q
    ||||| ||| |||||||||||| ||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataatacc-ttaaccatttattatttcatt 20714493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 32543532 - 32543615
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||||||| |||| ||| ||||||||||| | | ||||| |||| ||||||||| ||||||||||||||||||||||||    
T  32543532 aagaaaccaaataatttttgttaattttgatgaaattctttgtgtttttt-tataatacccttaatcatttattatttcatttta 32543615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 6129175 - 6129093
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||| |||||||||||| ||||||||||| ||| | | ||| | ||||||| |||||| |||||||||||||||||||||    
T  6129175 caagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 26676842 - 26676714
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||| |||||||||| ||||| | | ||||||| ||||||| |||  |||||| || ||||||||| || | |||||| |||||| | |  |||| ||||    
T  26676842 actctctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgtttttt 26676743  T
Q  188 ctataatacctttaatcatttattatttc 216  Q
    |||||||||| ||| ||||||||||||||    
T  26676742 ctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 19692750 - 19692855
Alignment:
Q  114 cattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattat 213  Q
    ||||||| |||||||  ||  ||||||||| ||||||||| || | |||||| |||||| | | ||||| |||||||||||| | ||| |||||||||||    
T  19692750 cattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattat 19692849  T
Q  214 ttcatt 219  Q
    ||||||    
T  19692850 ttcatt 19692855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 19703335 - 19703440
Alignment:
Q  114 cattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattat 213  Q
    ||||||| |||||||  ||  ||||||||| ||||||||| || | |||||| |||||| | | ||||| |||||||||||| | ||| |||||||||||    
T  19703335 cattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttattat 19703434  T
Q  214 ttcatt 219  Q
    ||||||    
T  19703435 ttcatt 19703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 48652268 - 48652351
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||| |||||||||||| ||||||||||||||| | | ||| | |||||| ||| || |||| |||||||||||||||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaattctttgtat-ttttctttaacacatttactcatttattatttcatt 48652351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 34284234 - 34284171
Alignment:
Q  147 aataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttat 210  Q
    |||||||||| ||| ||||||||||| ||| ||| | |||||||||||||| ||||| ||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaattatttat 34284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 18507469 - 18507428
Alignment:
Q  158 ttatttttgatgaaaatatgtgtgtgttttctataatacctt 199  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  18507469 ttatttttgatgaaattttgtgtgttttttctataatacctt 18507428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 23366786 - 23366924
Alignment:
Q  84 ataaactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtg 183  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  23366786 ataaactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtg 23366885  T
Q  184 ttttctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23366886 ttttctataatacccttaatcatttattatttcatttta 23366924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 3518909 - 3519043
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3518909 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 3519008  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||| ||||||||||||||||||    
T  3519009 ctataatacccttaataatttattatttcatttta 3519043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 39938171 - 39938305
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39938171 actccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 39938270  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  39938271 ctataatacccttaatcatttattatttcatttta 39938305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 1102504 - 1102638
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1102504 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 1102603  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| |||| |||||||||||||||||||    
T  1102604 ctataatacccttaaccatttattatttcatttta 1102638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 37674013 - 37673887
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  37674013 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 37673914  T
Q  188 ctataatacctttaatcatttattatt 214  Q
    |||||||||| ||||||||||||||||    
T  37673913 ctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 12970015 - 12969888
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||    
T  12970015 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatatttt 12969916  T
Q  188 ctataatacctttaatcatttattattt 215  Q
    |||||||||| |||| ||||||||||||    
T  12969915 ctataatacccttaaccatttattattt 12969888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 1646317 - 1646422
Alignment:
Q  115 attttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatt 214  Q
    |||||| ||||||||||  ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgttttctataatacccttaatcatttattatt 1646414  T
Q  215 tcatttta 222  Q
    ||||||||    
T  1646415 tcatttta 1646422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 22388335 - 22388277
Alignment:
Q  164 ttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatttta 22388277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 14779838 - 14779909
Alignment:
Q  146 aaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||| ||||||||||||||| ||| ||||| |||||||||||||  ||| |||||||||||||||||    
T  14779838 aaataaatttttttatttttgatgaaattatttgtgttttttctataatac--ttactcatttattatttcatt 14779909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 34224430 - 34224378
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  34224430 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 35179164 - 35179104
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataata 195  Q
    |||||||||  ||||||||||| ||||||||||||||| | ||||||| ||||||||||||    
T  35179164 accaagaaatgaaataaattttgttatttttgatgaaattttgtgtgttttttctataata 35179104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 1002997 - 1002875
Alignment:
Q  97 gtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatac 196  Q
    ||||||||||||||||   |||||  || ||| |||  || |||||| |||||||||||||||||||||||||||| |   | ||| ||||| | ||||     
T  1002997 gtttcaaaatacatgtcgcttttgaggatattacacatactaagaaatcaaataaattttattatttttgatgaaattccttttgttttttcgacaataa 1002898  T
Q  197 ctttaatcatttattatttcatt 219  Q
    | ||| |||||||||||||||||    
T  1002897 cattactcatttattatttcatt 1002875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 219
Target Start/End: Complemental strand, 32840401 - 32840317
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgt---tttctataatacctttaatcatttattatttcatt 219  Q
    |||||| |||||||||||| ||||||||||||||| | ||||| | |   ||||||||||||| |||   |||||||||||||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcatt 32840317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 18078104 - 18078188
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||| ||| |||||||||||| ||||||||||||||  | | ||||  |||||||||||||  || | ||||||||| ||||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcatt 18078188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 19976380 - 19976459
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    ||||||||| ||||||||||||  || ||||||| ||| ||||||| | |||||||||||||| |||   |||||||||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataatacccttacctatttattattt 19976459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 321627 - 321761
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  321627 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 321726  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||| | ||||||||||||||||||||||||    
T  321727 ctataatatccttaatcatttattatttcatttta 321761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 23045555 - 23045421
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23045555 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 23045456  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  23045455 ctataatacccttaatcatttattatttcatttta 23045421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 40783933 - 40783799
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40783933 actccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 40783834  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  40783833 ctataatacccttaatcatttattatttcatttta 40783799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 284334 - 284468
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  284334 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtttt 284433  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  284434 ctataatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 24772181 - 24772054
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  24772181 actccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatttt 24772082  T
Q  188 ctataatacctttaatcatttattattt 215  Q
    |||||||||| |||| ||||||||||||    
T  24772081 ctataatacccttaaccatttattattt 24772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 23526236 - 23526372
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgt 182  Q
    |||| ||||| ||| ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||    
T  23526236 catatactccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgt 23526335  T
Q  183 gttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  23526336 gttttctataatacccttaaccatttattatttcatt 23526372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 27211241 - 27211113
Alignment:
Q  87 aactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttt 186  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||| |||| ||| |||||||||    
T  27211241 aactccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgttt 27211142  T
Q  187 tctataatacctttaatcatttattattt 215  Q
    ||||||||||| |||| ||||||||||||    
T  27211141 tctataatacccttaaccatttattattt 27211113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 47038126 - 47037994
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||||| |||||| |||||||||||| |||||||||||||||||||||  |||||||    
T  47038126 actccatccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgt--gtgtttt 47038029  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  47038028 ctataatacccttaatcatttattatttcatttta 47037994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 46771644 - 46771769
Alignment:
Q  94 tccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataa 193  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataa 46771743  T
Q  194 tacctttaatcatttattatttcatt 219  Q
    |||| |||| |||||||| |||||||    
T  46771744 tacccttaaccatttattttttcatt 46771769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 33082773 - 33082873
Alignment:
Q  115 attttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatt 214  Q
    |||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||    
T  33082773 attttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccatttattatt 33082872  T
Q  215 t 215  Q
    |    
T  33082873 t 33082873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 52037382 - 52037267
Alignment:
Q  102 aaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataataccttta 201  Q
    ||||||||||| ||||||  |||||||||| || |||| |||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||  |||    
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaatta--tgtgtgttttctataatactctta 52037285  T
Q  202 atcatttattatttcatt 219  Q
    | ||||||||||||||||    
T  52037284 accatttattatttcatt 52037267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 1749357 - 1749435
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    ||||||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||| | |||| ||||||||||||    
T  1749357 caagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataatagcattaaccatttattattt 1749435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 40261548 - 40261419
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattg-cactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtg-tgtt 185  Q
    ||||||||||||||| ||||||||||  ||||| |||||||  |||  ||||||||| |||||||||||| ||| ||||||||||| |  ||||| | ||    
T  40261548 actccctccgtttcacaatacatgttgcttttg-agaaatttacacataccaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgttttt 40261450  T
Q  186 ttctataatacctttaatcatttattatttc 216  Q
    |||||||||| | |||| |||||||||||||    
T  40261449 ttctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 3943061 - 3943113
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  3943061 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 9588671 - 9588723
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  9588671 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 41959079 - 41959131
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  41959079 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 219
Target Start/End: Complemental strand, 51065032 - 51064898
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||| ||||| ||| ||||||  ||||||| |||  |||||| || ||||||||| || | ||||||||||||| | | ||||| ||||    
T  51065032 actccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttt 51064933  T
Q  188 ctat---aatacctttaatcatttattatttcatt 219  Q
    ||||   |||||| ||| || ||||||||||||||    
T  51064932 ctataataatacccttactcgtttattatttcatt 51064898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 215
Target Start/End: Complemental strand, 1838053 - 1837978
Alignment:
Q  138 aagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    |||||| |||||||||||| ||||||||||||||| ||  ||||| |||||||||||||| |||  ||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaatta--tgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 31004012 - 31003935
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    ||||||||| |||||||||||||||   ||| |||||| ||||||| | |||||||||||||| |||| ||||||||||||    
T  31004012 accaagaaatcaaataaattttatt---tttaatgaaagtatgtgtattttttctataatacccttaaccatttattattt 31003935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 18396754 - 18396827
Alignment:
Q  146 aaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||| |||||||| |||||| ||||||||  ||||||||||||  ||||| |||| |||||||||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcatt 18396827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 13985043 - 13984991
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  13985043 actccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 7765072 - 7765147
Alignment:
Q  146 aaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatttt 221  Q
    ||||||||||| ||||||||| ||||| ||| |||||||||||  |||||||  ||| |||||||||||| |||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttt 7765147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 3657125 - 3657199
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcattta 209  Q
    ||||||||| |||||||||||| |||||||| |||||| | ||| ||| |||||||||||| | |||| ||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta 3657199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  147 aataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttatta 212  Q
    |||||||||| ||||||||||| ||| ||| | |||||||||||||||||| |||| |||||||||    
T  40562797 aataaattttgttatttttgat-aaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 52478016 - 52478098
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||| |||||||||||| |||||||||||||||   | ||||| |||||||||||| | ||||  |||||| ||||||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaa--ttttgtgttttttctataataaccttaaaaatttatcatttcatt 52478098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 44227849 - 44227889
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  44227849 actccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 27143239 - 27143156
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtg-tgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||| |||||||||||| |||||||||| |||| |  ||| | | ||||||||||||   |||||||||||||||||||||    
T  27143239 caagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcatt 27143156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 31061659 - 31061599
Alignment:
Q  158 ttatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    |||||||| |||||| ||||||||| ||||| |||||||| | || ||||||||||||||||    
T  31061659 ttattttttatgaaattatgtgtgttttttccataataccct-aaccatttattatttcatt 31061599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 34458950 - 34458868
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||| ||||||||||||  ||||||| |||||| | ||||| |  ||||||||||| | ||| | |||||||||||||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattctgtgttt--tttctataataaccttactaatttattatttcatt 34458868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 44228285 - 44228228
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    |||| ||| ||||| ||||||||||||||| ||||||| |||||||||  ||||||||    
T  44228285 catatactacctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 3943803 - 3943763
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  3943803 actccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 6766368 - 6766400
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttca 115  Q
    |||| ||||||||||||||||||||||||||||    
T  6766368 catatactccctccgtttcaaaatacatgttca 6766400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  101 caaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaat 153  Q
    ||||||| |||| ||||||| | |||| ||| |||||||||||||||||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 41959849 - 41959809
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaatt 128  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  41959849 actccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 175 - 41
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  175 actctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 76  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  75 ctataatacccttaatcatttattatttcatttta 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 12807129 - 12806995
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12807129 actccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 12807030  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  12807029 ctataatacccttaatcatttattatttcatttta 12806995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 25773650 - 25773784
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  25773650 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 25773749  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  25773750 ctataatacccttaatcatttattatttcatttta 25773784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 30720768 - 30720634
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30720768 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 30720669  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
     ||||||||| |||||||| |||||||||||||||    
T  30720668 ttataatacccttaatcatctattatttcatttta 30720634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 40886886 - 40886752
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||    
T  40886886 actccatccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtatttt 40886787  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  40886786 ctataatacccttaatcatttattatttcatttta 40886752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 10285333 - 10285199
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    |||||||||||||||||||| ||||  |||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  10285333 actccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 10285234  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| ||||||||||||||||||||||||    
T  10285233 ctataatacccttaatcatttattatttcatttta 10285199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 36561375 - 36561241
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||| ||||||||||||||||||| ||||||  | |||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36561375 actccatccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 36561276  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    ||||||||||||||| |||||||||||||||||||    
T  36561275 ctataatacctttaaccatttattatttcatttta 36561241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 37900905 - 37900769
Alignment:
Q  83 cataaactccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgt 182  Q
    |||| ||||||||||||||||||||||  | ||||||| |||||||||| |||||||||||| |||||||||||  |||||||||||||| ||| |||||    
T  37900905 catatactccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgt 37900806  T
Q  183 gttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  37900805 gttttctataatacccttaaccatttattatttcatt 37900769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 7277688 - 7277567
Alignment:
Q  98 tttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacc 197  Q
    |||||||||||||||  |||||| |||||||| | ||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  198 tttaatcatttattatttcatt 219  Q
    ||||| ||||||||||||||||    
T  7277588 tttaaccatttattatttcatt 7277567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 25683467 - 25683377
Alignment:
Q  125 aattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattattt 215  Q
    ||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||| ||||||||||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattt 25683377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 16983259 - 16983393
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataa--attttattatttttgatgaaaatatgtgtgtgtt 185  Q
    |||||||| |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||   |||| || ||||||||||||  || ||||| ||    
T  16983259 actccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgtttt 16983358  T
Q  186 ttctataatacctttaatcatttattatttcatttt 221  Q
    ||||| |||||| |||| || ||||||||| |||||    
T  16983359 ttctacaatacccttaacca-ttattattttatttt 16983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 30403191 - 30403103
Alignment:
Q  135 accaagaaaccaaataaattttattatttttgatgaaaatatgtg-tgtgttttctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||||||||||||||| ||||||||||||||| | |||| | | |||||||||||||  |||||||||| |||||||||||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcatttta 30403103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 39070884 - 39071015
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgt-gtgtgttt 186  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| |||  |  ||| || ||||||||| || | ||||||||||||| | ||| |||| |||    
T  39070884 actccctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaa-tctgttgtgttttt 39070982  T
Q  187 tctataatacctttaatcatttattatttcatt 219  Q
    ||||||||||| ||| |||||||||||||||||    
T  39070983 tctataatacccttactcatttattatttcatt 39071015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 734611 - 734483
Alignment:
Q  90 tccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttct 189  Q
    ||||||||||||| ||||| ||| ||||||| ||||||| | |  |||||  || |||||||||||| | ||| ||||||||| | | ||||| ||||||    
T  734611 tccctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt-ttttct 734513  T
Q  190 ataatacctttaatcatttattatttcatt 219  Q
    |||||||| ||| |||||||||||||||||    
T  734512 ataatacccttactcatttattatttcatt 734483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 23098461 - 23098386
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttatta 212  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||  ||||| |||||||||| |||| |||||||||    
T  23098461 caagaaactaaataaattttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 15305264 - 15305216
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaac 136  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  15305264 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 11319564 - 11319691
Alignment:
Q  92 cctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctat 191  Q
    ||||||||||| ||||  ||| ||||||| ||||||| |||  || ||  || ||||||||| || | |||||| |||||| | | ||| | ||||||||    
T  11319564 cctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttttctat 11319663  T
Q  192 aatacctttaatcatttattatttcatt 219  Q
    |||||| ||| |||||||||||||||||    
T  11319664 aatacccttactcatttattatttcatt 11319691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 1056498 - 1056427
Alignment:
Q  147 aataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    |||||||||| |||||||| |||||| | | ||||| |||||||||||||  || ||||||||||||||||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgt-ttttctataatactattgatcatttattatttcatt 1056427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 88 - 215
Target Start/End: Original strand, 45455 - 45582
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||    
T  45455 actccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatttt 45554  T
Q  188 ctataatacctttaatcatttattattt 215  Q
    |||||||||| |||| ||||||||||||    
T  45555 ctataatacccttaaccatttattattt 45582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 171 - 297
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgtttt 187  Q
    ||||||||||||||||||||||| | || |||| |||||||||| |||||        ||||||||||| |||||||| |||||||||||||||||||||    
T  171 actccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgtttt 262  T
Q  188 ctataatacctttaatcatttattatttcatttta 222  Q
    |||||||||| |||| |||||||||||||||||||    
T  263 ctataatacccttaaccatttattatttcatttta 297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 525 - 410
Alignment:
Q  102 aaaatacatgttcattttgcagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataataccttta 201  Q
    |||||||||||||||||||  ||||||||| ||| ||| ||| |||||||||||| ||||||||||| ||| ||  |||||||||| ||||||||| |||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaatta--tgtgtgttttttataataccctta 428  T
Q  202 atcatttattatttcatt 219  Q
    ||||||||||||||||||    
T  427 atcatttattatttcatt 410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 4416 - 4489
Alignment:
Q  13 aatatattagtcattaaaatatatatttataaagacatactgtcaaagggatagcagacacacataaaaccata 86  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  4416 aatatattagtcattaaaatataaatttataaagacatactgtcaaaatgatagcagacacacataaaaccata 4489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 70874 - 70956
Alignment:
Q  137 caagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttctataatacctttaatcatttattatttcatt 219  Q
    ||||||| |||||||||||| ||||||||||||||| | ||||||| |||||| ||| ||| |||| ||||||||||||||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcatt 70956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 23468 - 23520
Alignment:
Q  88 actccctccgtttcaaaatacatgttcattttgcagaaattgcactaaccaag 140  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  23468 actccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 65375 - 65308
Alignment:
Q  153 ttttattatttttgatgaaaatatgtgtgtgtttt-ctataatacctttaatcatttattatttcatt 219  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||| |||| ||||||||||||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcatt 65308  T

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