View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_3 (Length: 605)
Name: NF15183_low_3
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 9 - 587
Target Start/End: Complemental strand, 8174978 - 8174411
Alignment:
| Q |
9 |
agcagagaaacaatgcacaaaaac--gtttcaagattttctttgaaatgccccgtattttaaatattaaaaattaaaataaaatttaatgactagatcat |
106 |
Q |
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| T |
8174978 |
agcagagaaacaatgcacaaaaactagtttcaagattttctttgaaatgccccgtattttaaatattaaaaattaaaataaaatttaataactagatcat |
8174879 |
T |
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| Q |
107 |
tttagnnnnnnnnataaagctatattgtttaagttgatagtaaaagaatgagtattgcaattaaagtaatatttttagtggtacatttctagtggtgtat |
206 |
Q |
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| T |
8174878 |
tttagttttttt-atcaagctgtattgtttaa------------agaatgagtattgcaattaaagtaatatttttagtggtacatttctagtggtgtat |
8174792 |
T |
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| Q |
207 |
tttttaagtaagaaggataactcttggcgtttttgtgttgattaccgagtattaaatgccgcaactatcaaggacaaatttcccattcccacaattgatg |
306 |
Q |
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| T |
8174791 |
tttttaagtaagaaggataactcttggcgtttttgtgttgattacggagtattaaatgccgcaactatcaaggacaaatttcccattcccacaattgatg |
8174692 |
T |
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| Q |
307 |
agttgctagatgaacttggtggtgcttctattttcagtaaattggacctttgcgcgggttatcatcaaattcgtgttcatccaagggacacctacaaaac |
406 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8174691 |
agttgctagatgagcttggtggtgcttctattttcagtaaattggacctttgagcgggttatcatcaaattcgtgttcatccaagggacacctacaaaac |
8174592 |
T |
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| Q |
407 |
agcatttaggacccatgacggacactttgaatttctcgtcatgccgttcggattaacaaatgctccctccacgtttcaagctacaatgaatcgccttttc |
506 |
Q |
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| T |
8174591 |
agcatttaggacccatgacggacactttgaatttctcgtcatgccgttcggattaacaaatgctccctccacgtttcaagctacaatgaatcgccttttc |
8174492 |
T |
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| Q |
507 |
tcttaatttttacgatgatttgtcattgttatctttgatgatattttgatagcccgcattgcagctaattttttctggcct |
587 |
Q |
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| T |
8174491 |
tcttaatttttacgaagatttgtcattgttatctttgatgatattttgatagcccgcgttgcagctaattttttctggcct |
8174411 |
T |
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