View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_30 (Length: 215)
Name: NF15183_low_30
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 561761 - 561937
Alignment:
| Q |
18 |
agaacaacacctcaaccactgttttcacattttaaacatccttccaaattttctttc-cacttaccnnnnnnnnnnnnnnctctttccattttgctaaaa |
116 |
Q |
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| T |
561761 |
agaacaacacctcaaccactgttttcacattttaaacatccttccaaattttctttctcacttaccttttttttttt---ctctttccattttgctaaaa |
561857 |
T |
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| Q |
117 |
acacaacaaaccctgcaattttggcccc--tccacaatccttttagcatttgtagtgagggagtacaatttgttgtgtca |
194 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
561858 |
acacaacaaaccctgcaattttggccccactccacaatccttttagcatttgtagtgagggagtacaatttgttgtgtca |
561937 |
T |
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