View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_31 (Length: 212)
Name: NF15183_low_31
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 46024644 - 46024476
Alignment:
| Q |
3 |
atcagatatatagcggcagcatgcatatgtaacatatatcagatatatagtgaacataaataaattaataactagaaataaacaaaatgaagaagaatga |
102 |
Q |
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| T |
46024644 |
atcagatatatagtggcagcatgcatatgtaacatata-----------gtgaacataaataaattaataactggaaataaacaaaatgaagaagaatga |
46024556 |
T |
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| Q |
103 |
atacttaaaacatacttgtttaaggggttatttaattaattaacaatgagaattaagaagcgatgaaagaagtagcaaca |
182 |
Q |
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| T |
46024555 |
atacttaaaacatacttgtttaaggggttatttaattaattaacaatgagaattaagaagcgctgaaagaaggagcaaca |
46024476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 46263551 - 46263684
Alignment:
| Q |
8 |
atatatagcggcagcatgcatatgtaacatatatcagatatatagtgaacataaataaattaataactagaaataaacaaaatgaagaagaatgaatact |
107 |
Q |
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| T |
46263551 |
atatatagtggcagcatgcatatgtaacatatatcagatatatagtgaacataaataaattaataactggaaataaacaaaatgaagaagaatgaatact |
46263650 |
T |
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| Q |
108 |
taaaacatacttgtttaaggggttatttaattaa |
141 |
Q |
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| T |
46263651 |
taaaacatacttgtttaaggggttatttaattaa |
46263684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 46264842 - 46264891
Alignment:
| Q |
133 |
tttaattaattaacaatgagaattaagaagcgatgaaagaagtagcaaca |
182 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
46264842 |
tttagttaattaacaatgagaattaagaagcgctgaaagaaggagcaaca |
46264891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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