View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_4 (Length: 591)
Name: NF15183_low_4
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 328 - 576
Target Start/End: Complemental strand, 7089339 - 7089091
Alignment:
| Q |
328 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
427 |
Q |
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| T |
7089339 |
ttgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacagaatttttaatatca |
7089240 |
T |
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| Q |
428 |
ttggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatggttaatgcattat |
527 |
Q |
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| T |
7089239 |
ttggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtctcctcaatcaatccacattttttcatggttaatgcattat |
7089140 |
T |
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| Q |
528 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttct |
576 |
Q |
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| T |
7089139 |
tattctactgtttacttgatcattaagcaatgaacaggtctaattttct |
7089091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 291
Target Start/End: Complemental strand, 7089612 - 7089340
Alignment:
| Q |
20 |
tagtgctcacatgaaattactctctatttggtaacaaaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtatgta |
119 |
Q |
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| T |
7089612 |
tagtgctcacatgaaattactctctatttggtaacaaaattttgttggaatttttttaaaataatactaagacttctctttgaatcaaatgaagtatgta |
7089513 |
T |
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| Q |
120 |
gttgttaaaaattgaattaccttcttttaggcnnnnnnn-gtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcattaaact |
218 |
Q |
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| T |
7089512 |
gttgttaaaacttgaattaccttcttttaggcttttttttgtagtattctttttcatctttctgttttccagagtaaacttacaattcaatcattaaact |
7089413 |
T |
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| Q |
219 |
gttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctat |
291 |
Q |
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| T |
7089412 |
gttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctat |
7089340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 115 - 576
Target Start/End: Complemental strand, 7668888 - 7668433
Alignment:
| Q |
115 |
atgtagttgttaaaaattgaattaccttcttttaggcnnnnnnngtagtattctttttcatctttctgttttccagagtaaagttacaattcaatcatta |
214 |
Q |
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| T |
7668888 |
atgtagttgttaaaacttgaaataccctcttttaggttttttttgtagtattctttttcatccttctgttttccagagtgaactttcaattcaatcgcta |
7668789 |
T |
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| Q |
215 |
aactgttaccttatctcttattcagtccctaaagtatggaaatgtaacaaatagtctcttaactattctcaatctatgaagttagtagctaaattatctc |
314 |
Q |
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| T |
7668788 |
aactatcacattctctcctatttagtctttgaactacggaaatgtaataaatagtctataaactattctcgatctatgaagttagtctctaaactacc-- |
7668691 |
T |
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| Q |
315 |
ttaacttagtgaattgtgttattgtatttgcagctctttctggtgatatgagcaaacttctcttggcagcaaagaagattagaagagcaacatgcacaga |
414 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
7668690 |
--atctttgtgaattgtgttattgtatttgcagctctttctggtgat--gagcaaacttctcttggctgcaaagaagattagaagagcaacatgcacaaa |
7668595 |
T |
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| Q |
415 |
atttttaatatcattggttactgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcctcaatcaatccacattttttcatg |
514 |
Q |
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| T |
7668594 |
ttttttaatatcattggtttctgatgatttctctagagctaacaatacttacattggaaagttaaggttagtgtcccatatcaattcacatctttt-aag |
7668496 |
T |
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| Q |
515 |
gttaatgcattattattctactgtttacttgatcattaagc-aatgaacaggtctaattttct |
576 |
Q |
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| T |
7668495 |
gctaatgcattattattctagtgcttagttgatcattaagcaaaataacaggtctaattttct |
7668433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 7669440 - 7669346
Alignment:
| Q |
22 |
gtgctcacatgaaattactctctatttggtaacaaaattttgttggaatttttgtaaaataatactaagacttctctttgaatcaaatgaagtat |
116 |
Q |
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| T |
7669440 |
gtgctcacatgaaattattctctatttgataacaaaattttgtttggatttttctaaaatcacaccaaggtttctctttgaatcaaattaagtat |
7669346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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