View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_low_7 (Length: 433)

Name: NF15183_low_7
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_low_7
NF15183_low_7
[»] chr1 (4 HSPs)
chr1 (9-364)||(51848993-51849348)
chr1 (293-363)||(24136809-24136879)
chr1 (309-364)||(18540960-18541015)
chr1 (308-364)||(32811768-32811824)
[»] chr4 (10 HSPs)
chr4 (289-364)||(53356962-53357037)
chr4 (294-364)||(51540737-51540807)
chr4 (289-363)||(12241169-12241243)
chr4 (309-364)||(40756032-40756087)
chr4 (292-363)||(29406925-29406996)
chr4 (289-364)||(39880915-39880990)
chr4 (292-349)||(4489687-4489744)
chr4 (253-286)||(42132707-42132740)
chr4 (308-364)||(25725598-25725654)
chr4 (292-364)||(30890173-30890245)
[»] chr8 (7 HSPs)
chr8 (293-364)||(35819048-35819119)
chr8 (293-364)||(40719533-40719604)
chr8 (292-363)||(31806411-31806482)
chr8 (293-363)||(30608599-30608669)
chr8 (290-364)||(39153570-39153644)
chr8 (293-362)||(34494527-34494596)
chr8 (292-364)||(34996248-34996320)
[»] chr7 (6 HSPs)
chr7 (291-364)||(21153163-21153236)
chr7 (292-364)||(36920896-36920968)
chr7 (293-364)||(33212137-33212208)
chr7 (308-364)||(42640954-42641010)
chr7 (289-364)||(44596029-44596104)
chr7 (292-364)||(6822423-6822495)
[»] chr6 (1 HSPs)
chr6 (292-361)||(15098852-15098921)
[»] chr3 (8 HSPs)
chr3 (288-364)||(40159710-40159786)
chr3 (292-363)||(50745472-50745543)
chr3 (293-363)||(31017286-31017355)
chr3 (293-364)||(11335191-11335262)
chr3 (281-364)||(47988362-47988445)
chr3 (281-364)||(47997649-47997732)
chr3 (281-364)||(48006936-48007019)
chr3 (292-364)||(51032514-51032586)
[»] chr2 (6 HSPs)
chr2 (293-364)||(44059512-44059583)
chr2 (309-364)||(31635715-31635770)
chr2 (309-361)||(11980763-11980815)
chr2 (291-364)||(16051276-16051348)
chr2 (292-364)||(4723677-4723749)
chr2 (308-364)||(41868273-41868329)
[»] chr5 (2 HSPs)
chr5 (293-364)||(36415951-36416022)
chr5 (291-351)||(20125514-20125574)
[»] scaffold0001 (1 HSPs)
scaffold0001 (295-364)||(404859-404928)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 364
Target Start/End: Complemental strand, 51849348 - 51848993
Alignment:
Q  9 attattctgcggagcttagattataatcatgatgannnnnnnatgttataataatgtgacctggtctaataatgtaagcttgaactaacgtgaactgcta 108  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51849348 attattctgcggagcttagattataatcatgatgatttttttatgttataataatgtgacctggtctaatattgtaagcttgaactaacgtgaactgcta 51849249  T
Q  109 ccacaagacagagtaccgaatagttgtctggaatttgaaatgttttggattttgtaaccgagagccgccaggtgcaccaaaaggtatcacatcacaatag 208  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51849248 ccacaagacagagtaccgaatagttttctggaatttgaaatgttttggattttgtaaccgagagccgccaggtgcaccaaaaggtatcacatcacaatag 51849149  T
Q  209 tttataaacacttgttacccccaactcactaacctatcttttaactactccctacctctcataataactgagtcattttcaatagagtagtgatgtatat 308  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  51849148 tttataaacacttgttaccctcaactcactaacctatcttttaactactccctacgtctcataataactgagtcatttttaatagagtagtgatgtatat 51849049  T
Q  309 acaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51849048 acaactctttggtacaacctctatgacaactttgattttctcttatttgattggtc 51848993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 24136809 - 24136879
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    |||||||||| | ||||||||||||| ||||||  | |||||||| |||| ||||||||||||||||||||    
T  24136809 gagtagtgatatttatacaactttttagtacaatttttatgacaaatttgtttttctcttatttgattggt 24136879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 18540960 - 18541015
Alignment:
Q  309 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  18540960 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 18541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 32811768 - 32811824
Alignment:
Q  308 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||| ||| ||||||| |  |||||||||||| |||||||| ||||||||||||    
T  32811768 tacaactctttagtacaactttaatgacaactttggttttctctcatttgattggtc 32811824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 53356962 - 53357037
Alignment:
Q  289 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  53356962 aatagagtagtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgattggtc 53357037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 51540737 - 51540807
Alignment:
Q  294 agtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||| ||||||||||| ||||||||||| | |||||||| |||| ||||||||  |||||||||||    
T  51540737 agtagtgatatatatacaactctttggtacaacttttatgacaattttggttttctctcttttgattggtc 51540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 12241243 - 12241169
Alignment:
Q  289 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    |||||||||||||| | | ||||||| ||| ||||||||| ||||||||||||  ||||||||  ||||||||||    
T  12241243 aatagagtagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgattggt 12241169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 40756087 - 40756032
Alignment:
Q  309 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  40756087 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 40756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 29406925 - 29406996
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||| |||| ||||||||  ||||||||||    
T  29406925 agagtagtgatatatgtacaactctttggtacaactttcatgacaattttggttttctctattttgattggt 29406996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 39880915 - 39880990
Alignment:
Q  289 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||| |||||||| ||| ||||||| ||| ||||||| |  |||||||||||| ||||||||  |||||||||||    
T  39880915 aatagcgtagtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtc 39880990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 4489687 - 4489744
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttct 349  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| |||||||    
T  4489687 agagtagtgatatatgtacaactctttggtacaactttcatgacaactttaattttct 4489744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 42132707 - 42132740
Alignment:
Q  253 ctactccctacctctcataataactgagtcattt 286  Q
    ||||||||||| ||||||||||||||||||||||    
T  42132707 ctactccctacatctcataataactgagtcattt 42132740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 25725598 - 25725654
Alignment:
Q  308 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| ||||||    
T  25725598 tacaactcttttgtacaacctttatgacaactttgtttttctatcatttggttggtc 25725654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 30890173 - 30890245
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||| |||||| ||| ||||||| ||||||||||  | ||||||||||||| ||||||||  ||||| |||||    
T  30890173 agagcagtgatatatgtacaactctttggtacaatttttatgacaactttggttttctctattttgactggtc 30890245  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 35819119 - 35819048
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  35819119 gagtagtgatctatgtacaactttttggtacaacttctatgacaattttgattgtctctcatttgattggtc 35819048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 40719533 - 40719604
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| ||| ||||||| ||| ||||||| | ||||||||||||| ||||||||  |||||||||||    
T  40719533 gagtagtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtc 40719604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 31806482 - 31806411
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    ||||||||||| ||| || |||| ||||||||||| | ||| ||||||||  |||||||| |||||||||||    
T  31806482 agagtagtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgattggt 31806411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 30608599 - 30608669
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    |||||||||| | | ||||||| ||| ||||||||| ||||||||||||| |||||| |  ||||||||||    
T  30608599 gagtagtgatatttgtacaactcttttgtacaacctttatgacaactttgtttttctatcttttgattggt 30608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 364
Target Start/End: Original strand, 39153570 - 39153644
Alignment:
Q  290 atagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||||||| ||| ||||||| ||| ||| ||| |  |||| ||||||||||||||||  |||||||||||    
T  39153570 atagagtagtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtc 39153644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 362
Target Start/End: Original strand, 34494527 - 34494596
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattgg 362  Q
    |||||||||| | | |||| || ||| |||||||   ||||||||||||||||||||||| |||||||||    
T  34494527 gagtagtgatatttgtacatctctttagtacaactcttatgacaactttgattttctcttctttgattgg 34494596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 34996248 - 34996320
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||||| ||| ||||||| ||||||||||| |  ||||||||||| |||| ||||  ||| |||||||    
T  34996248 agagtagtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctcttttcattggtc 34996320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 21153236 - 21153163
Alignment:
Q  291 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||  |||||||||||    
T  21153236 tagagtagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgattggtc 21153163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 36920968 - 36920896
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||||| ||| ||||||| ||||||||||| | ||| |||||||||||||||||| ||||||||||||    
T  36920968 agagtagtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgattggtc 36920896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 33212208 - 33212137
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| ||||||||||||    
T  33212208 gagtagtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggtc 33212137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 42641010 - 42640954
Alignment:
Q  308 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||| ||||||||||| | ||||| ||||||||||||||||| |||||||||||    
T  42641010 tacaactctttggtacaacttttatgataactttgattttctcttttttgattggtc 42640954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 364
Target Start/End: Original strand, 44596029 - 44596104
Alignment:
Q  289 aatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||||||| | | || || | ||||||||||  | ||||||||||||| |||||||| ||||||||||||    
T  44596029 aatagagtagtgatatttgtataattctttggtacaaattttatgacaactttggttttctctcatttgattggtc 44596104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 6822423 - 6822495
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    ||||||||||| | || |||| ||||||||||||| ||| || ||||||||| ||||||||| |||||||||||    
T  6822423 agagtagtgatatttaaacaagtttttggtacaac-tctttggacaactttggttttctcttctttgattggtc 6822495  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 15098921 - 15098852
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattg 361  Q
    ||||| ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||    
T  15098921 agagttgtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgattg 15098852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 40159710 - 40159786
Alignment:
Q  288 caatagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  |||||||||||    
T  40159710 caatagagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtc 40159786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 363
Target Start/End: Complemental strand, 50745543 - 50745472
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    |||||||| || ||| ||||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||    
T  50745543 agagtagtaatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgattggt 50745472  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 363
Target Start/End: Original strand, 31017286 - 31017355
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggt 363  Q
    |||||||||| ||| ||||||| |||| || ||| |||||||||||||||||||||||| |||||||||||    
T  31017286 gagtagtgatatatgtacaactctttgata-aacttctatgacaactttgattttctctcatttgattggt 31017355  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 11335191 - 11335262
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| ||| ||||||| ||||||||||| | ||| ||||||||  |||||||| ||||||||||||    
T  11335191 gagtagtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgattggtc 11335262  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 47988362 - 47988445
Alignment:
Q  281 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  47988362 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 47988445  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 47997649 - 47997732
Alignment:
Q  281 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  47997649 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 47997732  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 48006936 - 48007019
Alignment:
Q  281 tcattttcaatagagtagtgatgtatatacaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||  ||||||||||| | |  ||| |||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  48006936 tcattttcacaagagtagtgatatttgaacagctttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 48007019  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 51032514 - 51032586
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||||||| ||| |||||||||||  |||||| |  ||||||||||| ||||||| |  |||||||||||    
T  51032514 agagtagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgattggtc 51032586  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 44059583 - 44059512
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| | | ||||||||||||||||||| ||| ||||||||||| |||||||| | ||||||||||    
T  44059583 gagtagtgatatttgtacaactttttggtacaacttctgtgacaactttggttttctctcaattgattggtc 44059512  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 31635715 - 31635770
Alignment:
Q  309 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattggtc 364  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||    
T  31635715 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattggtc 31635770  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 11980815 - 11980763
Alignment:
Q  309 acaactttttggtacaacctctatg-acaactttgattttctcttatttgattg 361  Q
    |||||||||||||||||| ||| || ||||||||||||||||||| ||||||||    
T  11980815 acaactttttggtacaac-tctttggacaactttgattttctcttctttgattg 11980763  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 16051276 - 16051348
Alignment:
Q  291 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||||| | | |||| ||||||||||||||   |||||||||||| | |||||||| |||||||||||    
T  16051276 tagagtagtgatatttgtacatctttttggtacaactcttatgacaacttt-aatttctcttttttgattggtc 16051348  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 4723749 - 4723677
Alignment:
Q  292 agagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||| |||||| ||| ||||||| ||||||||||| | ||| ||||||||  ||||||||  |||||||||||    
T  4723749 agagcagtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtc 4723677  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 41868273 - 41868329
Alignment:
Q  308 tacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    ||||||| |||| |||||| | || |||||||||| ||||||| |||||||||||||    
T  41868273 tacaactctttgatacaacttttacgacaactttggttttctcatatttgattggtc 41868329  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 364
Target Start/End: Original strand, 36415951 - 36416022
Alignment:
Q  293 gagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||||| ||| ||||||| ||||||||||| |  |||||||||||| ||||||||  |||||||||||    
T  36415951 gagtagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtc 36416022  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 20125574 - 20125514
Alignment:
Q  291 tagagtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctct 351  Q
    |||||| ||||| ||||||||||| ||||| ||||| |  ||||||||||| |||||||||    
T  20125574 tagagtggtgatatatatacaactatttgggacaactttgatgacaactttcattttctct 20125514  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 404928 - 404859
Alignment:
Q  295 gtagtgatgtatatacaactttttggtacaacctctatgacaactttgattttctcttatttgattggtc 364  Q
    |||||||| | | ||||||| ||||||||||| | ||||||||||||| ||||||||| || ||||||||    
T  404928 gtagtgatatttgtacaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtc 404859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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