View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15184_high_1 (Length: 448)
Name: NF15184_high_1
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 157 - 432
Target Start/End: Original strand, 44450223 - 44450494
Alignment:
| Q |
157 |
caaatgacttgtttagacctttagcaaagattcaaagttataagtgtcaatgcaaacaaaaatggtaataatgaaacacccctgagaaaggtaacaaaga |
256 |
Q |
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| T |
44450223 |
caaatgacttgtctagacctttagcaaagattcaaagttataagtgtcaatgcaaacaaaaatggtaataatgaaacacccctgagaaaggtaacaaaga |
44450322 |
T |
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| Q |
257 |
aataacaaattaagttgaacaaaaacatnnnnnnnntcaatacaattttatctcgatacttaaagatataccgataatcattatttccttcctctatcac |
356 |
Q |
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| T |
44450323 |
aataacaaattaagttgaacaaaaacataaaaaaaatcaatacaattttatctcgatacttaaagatataccgataatcattat----ttcctccatcac |
44450418 |
T |
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| Q |
357 |
atttgtcaataatgcatgaaatagattaattattcattgttattacatcacacgctgtgaggtggaactaaaaatc |
432 |
Q |
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| T |
44450419 |
atttgtcaataatgcatgaaatagattaattattcattgttattacatcacacgctgtgaggtggaactaaaaatc |
44450494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44450076 - 44450137
Alignment:
| Q |
1 |
taaatgaatatcttctcgtttttgtttttattaagattgacaaagacaagtttcacaaaaaa |
62 |
Q |
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| T |
44450076 |
taaatgaatatcttctcgttttcgtttttattaagattgacaaagacaagtttcacaaaaaa |
44450137 |
T |
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