View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15184_high_11 (Length: 238)
Name: NF15184_high_11
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_high_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26314433 - 26314196
Alignment:
| Q |
1 |
tggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcactt |
100 |
Q |
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| T |
26314433 |
tggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggacttgatatgcaaagatccttcactt |
26314334 |
T |
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| Q |
101 |
gttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattca |
200 |
Q |
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| T |
26314333 |
gttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattca |
26314234 |
T |
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| Q |
201 |
tttcaactgaattcaacatgcatgctttatcgttttct |
238 |
Q |
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| T |
26314233 |
tttcaactgaattcaacatgcatactccatcgttttct |
26314196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 43109382 - 43109167
Alignment:
| Q |
1 |
tggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcactt |
100 |
Q |
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| T |
43109382 |
tggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttaatttgcaaagatccttcactt |
43109283 |
T |
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| Q |
101 |
gttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattca |
200 |
Q |
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| T |
43109282 |
gttaaagctaaaatttatgaatggagtgatggtgaagatcaagaaagggttttgcatcaattaatcaacaaaatatcaatggaagaaactgctgaattca |
43109183 |
T |
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| Q |
201 |
tttcaactgaattcaa |
216 |
Q |
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| T |
43109182 |
tttcaactgaattcaa |
43109167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5251794 - 5251999
Alignment:
| Q |
1 |
tggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcactt |
100 |
Q |
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||||||||||||||| || ||||| |||| ||| ||||| || |||||||||||||||||||||| || |||| |||||||||||||| ||||||||| |
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| T |
5251794 |
tggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttccagtgtgggatttgatatgcaaagacccttcactt |
5251893 |
T |
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| Q |
101 |
gttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattca |
200 |
Q |
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| T |
5251894 |
gttaaggctgaaattcatggttggtgtgatggagaagagcttgaacaaattttgattcaattgatcaacaaaattatcattgaggaaaatgctcaattca |
5251993 |
T |
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| Q |
201 |
tttcaa |
206 |
Q |
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|||||| |
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| T |
5251994 |
tttcaa |
5251999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5272035 - 5271861
Alignment:
| Q |
1 |
tggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcactt |
100 |
Q |
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|||||||||||| || ||||| || ||||||| | |||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||||| |
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| T |
5272035 |
tggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgtgggatttgatatgcaaagacccttcactt |
5271936 |
T |
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| Q |
101 |
gttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatt |
175 |
Q |
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| T |
5271935 |
gttaaggctgaaattcatggttggtgtgatggagaagagcttgaacaaattttgattcaattgatcaacaaaatt |
5271861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 5269645 - 5269775
Alignment:
| Q |
8 |
tattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaag |
107 |
Q |
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| T |
5269645 |
tattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtgggatttgatatgcaaagatccttcacttgttaagg |
5269744 |
T |
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| Q |
108 |
ctaaaatttatgaatggagtgatggagaaga |
138 |
Q |
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| T |
5269745 |
ctgaaattcatggttggagtgatggagaaga |
5269775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 5275988 - 5275887
Alignment:
| Q |
37 |
agactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaa |
136 |
Q |
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|||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||| |
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| T |
5275988 |
agactttgtgatgccaaggaagaattttccagtgtgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaa |
5275889 |
T |
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| Q |
137 |
ga |
138 |
Q |
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|| |
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| T |
5275888 |
ga |
5275887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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