View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15184_high_2 (Length: 398)
Name: NF15184_high_2
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 204 - 319
Target Start/End: Original strand, 35735118 - 35735238
Alignment:
| Q |
204 |
atacaacatgatacaacaaatgatataccacaacaaagcaataggaacatc----tgcaccatacataacacaaatta-----cacaatctagccagcct |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
35735118 |
atacaacatgatacaacaaatgatataccacaacaaagcaataggaacatcgatctgcaccatacataacacaaattaaattacacaatctagcc----t |
35735213 |
T |
|
| Q |
295 |
ctaattagaaatacaagccaataaa |
319 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35735214 |
ctaattagaaatacaagccaataaa |
35735238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 35734921 - 35734976
Alignment:
| Q |
10 |
ataattctaaacctaatcat----tcatggttgttaatttgtgtcatccaatactg |
61 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35734921 |
ataattctaaacctaatcattcattcatggttgttaatttgtgtcatccaatactg |
35734976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 35735264 - 35735297
Alignment:
| Q |
346 |
caaaggatcacatgcctttgtagaagacatatat |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35735264 |
caaaggatcacatgcctttgtagaagacatatat |
35735297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 203
Target Start/End: Original strand, 35735055 - 35735086
Alignment:
| Q |
172 |
ctacatttttattatgaataaaaacaaaccca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35735055 |
ctacatttttattatgaataaaaacaaaccca |
35735086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University