View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15184_high_7 (Length: 290)
Name: NF15184_high_7
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 44247494 - 44247230
Alignment:
| Q |
19 |
taaaaatcatcaaacagaactgttacatgaagaaagagcatctaaccttatcaatcattttgtaagattcggcactcttggcaacaacaccagccaacac |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247494 |
taaaaatcatgaaacagaactgttacatgaagaaagagcatctaaccttatcaatcattttgtaagattcggcactcttggcaacaacaccagccaacac |
44247395 |
T |
|
| Q |
119 |
ttgagaaggaacattatcaaccaaccatttaggccaaccatccaccatctcatcatcaaaacacctattcaactgcttcttactatctttcaactcacca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247394 |
ttgagaaggaacattatcaaccaaccatttaggccaaccatccaccatctcatcatcaaaacacctattcaactgcttcttactatctttcaactcacca |
44247295 |
T |
|
| Q |
219 |
tctctttttcctcttgcaccacc---attgccatcaactactttatgctttctgggttgtctctg |
280 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247294 |
tctctctttcctcttgcaccaccaatattgccatcaactactttatgctttctgggttgtctctg |
44247230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 2460266 - 2460229
Alignment:
| Q |
45 |
atgaagaaagagcatctaaccttatcaatcattttgta |
82 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
2460266 |
atgaagaaagagcacctaaccttataaatcattttgta |
2460229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University