View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15184_high_8 (Length: 273)

Name: NF15184_high_8
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15184_high_8
NF15184_high_8
[»] chr3 (3 HSPs)
chr3 (16-93)||(49406713-49406790)
chr3 (176-245)||(21331953-21332022)
chr3 (140-245)||(29218468-29218573)
[»] chr5 (1 HSPs)
chr5 (16-87)||(4938703-4938774)
[»] chr7 (1 HSPs)
chr7 (16-87)||(38970664-38970735)
[»] chr2 (1 HSPs)
chr2 (16-85)||(13150995-13151064)
[»] chr4 (1 HSPs)
chr4 (16-46)||(53347077-53347107)


Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 49406713 - 49406790
Alignment:
Q  16 gatgaaagggttaaacatgttgaaattctgacggaagaggccacgtggcacgctcgtattggaccaaccatgacgcgt 93  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||    
T  49406713 gatgaaagggttaaacatgttgaaattctgacaggagaggccacgtggcacgctcgtattggaccaaccatggcgcgt 49406790  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 21331953 - 21332022
Alignment:
Q  176 aaattacaatcggaagtttaatccttcatcgatcaccaaaaacagctaatacaacttgagcttcatggat 245  Q
    ||||||||||  ||||||||||||||||||| ||||||||||  | ||||||||||||||||||||||||    
T  21331953 aaattacaatatgaagtttaatccttcatcggtcaccaaaaatcggtaatacaacttgagcttcatggat 21332022  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 245
Target Start/End: Original strand, 29218468 - 29218573
Alignment:
Q  140 actttagagatttcattgaggccttattgggaaaacaaattacaatcggaagtttaatccttcatcgatcaccaaaaacagctaatacaacttgagcttc 239  Q
    ||||||||||||||||||||| ||| ||   |||||||||||||||  |||||||||| |||||||  ||||||||||| |  ||| |||||||||||||    
T  29218468 actttagagatttcattgagggcttgttcataaaacaaattacaatatgaagtttaatacttcatcagtcaccaaaaaccggcaatgcaacttgagcttc 29218567  T
Q  240 atggat 245  Q
     |||||    
T  29218568 gtggat 29218573  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 4938774 - 4938703
Alignment:
Q  16 gatgaaagggttaaacatgttgaaattctgacggaagaggccacgtggcacgctcgtattggaccaaccatg 87  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||    
T  4938774 gatgaaagggttaaacatgttgaaattttgaccgaagaggccatgtggcacgcttgtattggaccaaccatg 4938703  T

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Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 38970735 - 38970664
Alignment:
Q  16 gatgaaagggttaaacatgttgaaattctgacggaagaggccacgtggcacgctcgtattggaccaaccatg 87  Q
    ||||||||||||||||||||| ||||| |||| | |||||||||||| ||||||||||||||||||||||||    
T  38970735 gatgaaagggttaaacatgttaaaattatgaccggagaggccacgtgtcacgctcgtattggaccaaccatg 38970664  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13150995 - 13151064
Alignment:
Q  16 gatgaaagggttaaacatgttgaaattctgacggaagaggccacgtggcacgctcgtattggaccaacca 85  Q
    ||||||| ||||||||||||||||||| |||| | ||||| ||| |||||||||||||||||||||||||    
T  13150995 gatgaaaaggttaaacatgttgaaattttgaccggagaggtcacatggcacgctcgtattggaccaacca 13151064  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 53347077 - 53347107
Alignment:
Q  16 gatgaaagggttaaacatgttgaaattctga 46  Q
    |||||||||||||||||||||||||||||||    
T  53347077 gatgaaagggttaaacatgttgaaattctga 53347107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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