View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15184_high_9 (Length: 255)
Name: NF15184_high_9
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_high_9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 44247234 - 44246980
Alignment:
| Q |
1 |
ctctgctgtccattatgatcaataaccttaccctttgcaacatgtttttgactttgaccagtagatcttctgtgtgcaacaaaatcagaacttggaacat |
100 |
Q |
| |
|
||||| ||| ||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247234 |
ctctgatgtacatgatgatcaatatccttaccctttgcaacatatttttgactttgaccagtagatcttctgtgtgcaacaaaatcagaacttggaacat |
44247135 |
T |
|
| Q |
101 |
acccattttccatcttgaacctgtctagtcctctatagttagcttcagattctaatggtttggcttgaacacagcccatattaatggacccttgtagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247134 |
acccattttccatcttgaacctgtctagtcctctatagttagcttcagattctaatggtttggcttgaacacagcccatattaatggacccttgtagata |
44247035 |
T |
|
| Q |
201 |
ttcaaagtttattttataagtataactctccaaaataaagaaaaggtagaaagaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44247034 |
ttcaaagtttattttataagtataactctccaaaataaagaaaaggtagaaagaa |
44246980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University