View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15184_low_1 (Length: 450)
Name: NF15184_low_1
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 17668294 - 17667899
Alignment:
| Q |
14 |
cataggcatctgattctgttcttggaaatcaagatgaagataaatctatcggcactt----tacatgattgagagtgtgagagcaagaagggtaaaagga |
109 |
Q |
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| T |
17668294 |
cataggcatctgattctgttcttggaaatcaagatgaagataaatctatcgtcacttcaattacatgattgagagtgtgagagcaagaagggtaaaagga |
17668195 |
T |
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| Q |
110 |
agtttttcccttatggaaagctcttgtctgaactcttctacaagaacaagttgatcaagaacctgaaggattatggagcatcttcagagttagacacaga |
209 |
Q |
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| T |
17668194 |
agtttatcccttatggaaagctcttgtctgaactcttctacaagaacaagttgatcaagaacctgaaggattatggagcatcttcagagttagacacaga |
17668095 |
T |
|
| Q |
210 |
gtatggaaaagtgttcaactatgtcactttggttaatatgaagattctgaaaagtgatgaggttttggaatccaaacttcctgtctctatcagacaaatg |
309 |
Q |
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| T |
17668094 |
gtatggaaaagtgttcaactatgtcacttcggttaatatgaagattctgaaaagtgatgaggttttggattccaaacttcctttctctatcagacaaagg |
17667995 |
T |
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| Q |
310 |
aatccagacttcattaacgacgatcgtgttatcttaagacttgataacaaggaagtcattcagagttacacggagaaaggagtcaacatcggcatg |
405 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |
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| T |
17667994 |
aatccagacttcattaacaacgatcgtgttatcttaagacttgataacaaggaagtcattcagagttacaccgaggaaggagtcaacatcagcatg |
17667899 |
T |
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