View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15184_low_14 (Length: 236)
Name: NF15184_low_14
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 26314657 - 26314825
Alignment:
| Q |
55 |
atatagatagatattagatatacaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatggaaaggcaaaattctcaa |
154 |
Q |
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| T |
26314657 |
atatagatagatattagatatacaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatagaaaggcaaaattctcaa |
26314756 |
T |
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| Q |
155 |
tcttccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattccaaagtg |
223 |
Q |
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| T |
26314757 |
tcttccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattccaaagtg |
26314825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 43110217 - 43110358
Alignment:
| Q |
76 |
acaccttgcacatgtttggagggcacaaattacatgtgtgaggaggcttgttgagatcatggaaaggcaaaattctcaatcttccttcttcatcaacata |
175 |
Q |
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| T |
43110217 |
acaccttgcacatgtttggaggacacagattacatttgtgaggaggcttattgagatcatggtaaggcaaaattctcaaccttc---cttcatcaacata |
43110313 |
T |
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| Q |
176 |
acctggattagtgttaatctccgagaaacattccctaattccaaa |
220 |
Q |
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| T |
43110314 |
acctggattagtgttaatctctgagaaacattccctaataccaaa |
43110358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 5272357 - 5272448
Alignment:
| Q |
126 |
ttgagatcatggaaaggcaaaattctcaatcttccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattcc |
217 |
Q |
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| T |
5272357 |
ttgaaatcatggtaaggtgaaattctaactcttccttcttgattaacataaccaggattagagttaatctctgagaagcattcactaattcc |
5272448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 5250204 - 5250134
Alignment:
| Q |
126 |
ttgagatcatggaaaggcaaaattctcaatcttccttcttcatcaacataacctggattagtgttaatctc |
196 |
Q |
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| T |
5250204 |
ttgaaatcatggtaaggtaaaattcttaatcttccttgttgattaacataaccaggattagtgttaatctc |
5250134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 5269397 - 5269333
Alignment:
| Q |
153 |
aatcttccttcttcatcaacataacctggattagtgttaatctccgagaaacattccctaattcc |
217 |
Q |
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| T |
5269397 |
aatcttccttcttgattaacataaccaggattggtgttaatctcagagaagcattcactaattcc |
5269333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 5276336 - 5276406
Alignment:
| Q |
126 |
ttgagatcatggaaaggcaaaattctcaatcttccttcttcatcaacataacctggattagtgttaatctc |
196 |
Q |
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| T |
5276336 |
ttgaaatcatggtaaggtgaaattctaactcttccttcttgattaacataaccaggattagtgttaatctc |
5276406 |
T |
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