View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15184_low_15 (Length: 221)
Name: NF15184_low_15
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 4920881 - 4920694
Alignment:
| Q |
18 |
gaaggaaggaatcttgataacttgtgacttgaatgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcattgactcgaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4920881 |
gaaggaaggaatcttgataacttgtgacttgaatgaattaaatttattaaactttcgtatgcttcctcgaaactacagatctttttcattgactcgaatt |
4920782 |
T |
|
| Q |
118 |
tttacgttgacttgatgaaactttcttgttcatgcttattcgaacaaaaacgaagaaccttcataccattttcttgttaaaacttcat |
205 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4920781 |
tttacgttgacttgatgaaacttccctgttcatgcttattcgaacaaaaacgaagaaccttcctaccattttcttgttaaaacttcat |
4920694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 4927124 - 4927079
Alignment:
| Q |
52 |
gaattaaatttattaaactttcgtatgcttcctcgaaactacagat |
97 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4927124 |
gaattaaatttattaaacttttgtatgcttcctcgaaactacagat |
4927079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 6967067 - 6967189
Alignment:
| Q |
75 |
tatgcttcctcgaaactacagatctttttcattgactcgaatttttacgttgacttgatgaaactttcttgttcatgcttattcgaacaaaaacgaagaa |
174 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
6967067 |
tatgcttcctcgaaactacatatctttt-cattgactcgaatttttacgttgacttgatgaaacttccttgttcatgcttcttcgagcaaaaacgaagaa |
6967165 |
T |
|
| Q |
175 |
ccttcataccattttcttgttaaa |
198 |
Q |
| |
|
|||| | |||||||||||||||| |
|
|
| T |
6967166 |
gcttccttccattttcttgttaaa |
6967189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University