View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15184_low_6 (Length: 301)
Name: NF15184_low_6
Description: NF15184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15184_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 31940898 - 31940612
Alignment:
| Q |
1 |
tattggttgttgtaacatatacattcatatataaaagctacatatactgctagtatggtcaactttccaagttagggtgagtactatagta------gta |
94 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
31940898 |
tattggttgttgtaacatatacatccatatataaaagctacatatactgctagtatggtcaactttccaaattagggtgagtactatagtatatatagta |
31940799 |
T |
|
| Q |
95 |
agcaatcattcatatggtaactaactggagtatatgagagagtaaatagagtattctcatgnnnnnnntgctatcttttgtttcccatgctacctttttg |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31940798 |
agcaatcattcatatggtaactaactggagtatatgagagagtacatagagtattctcatgaaaaaaatgctatcttttgtttcccatgctacctttttg |
31940699 |
T |
|
| Q |
195 |
ttggtagagaggcttctaaccgtctaggttctaacgttttcattgaaaaaggatttaatacttgaaagaaggtaaatagcgggaaaaatt |
284 |
Q |
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| T |
31940698 |
---ggagagaggcttctaaccgtctaggttctaacgttttcattgaaaaatgatttaatacttgaaagaaggtaaatagcgggaaaaatt |
31940612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 32000221 - 32000083
Alignment:
| Q |
1 |
tattggttgttgtaacatatacattcatatataaaagctacatatactgctagtatggtcaactttccaagttagggtgagtactatag--tagtaagca |
98 |
Q |
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| T |
32000221 |
tattggttgttgtaacatatacatccatatataaaagctacatatactactatagtggtcaactttccaagttaggatgagtactgtagtatagtaagca |
32000122 |
T |
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| Q |
99 |
atcattcatatggtaactaactggagtatatgagagagt |
137 |
Q |
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| T |
32000121 |
atcattcatgtggtaactaactggagtatatgagagagt |
32000083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 194
Target Start/End: Original strand, 46722690 - 46722718
Alignment:
| Q |
166 |
tatcttttgtttcccatgctacctttttg |
194 |
Q |
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| T |
46722690 |
tatcttttgtttcccatgctacctttttg |
46722718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 2827812 - 2827932
Alignment:
| Q |
163 |
tgctatcttttgtttcccatgctacctttttgttggtagagaggcttctaaccgtctaggttctaacgttttcattgaaaaaggatttaatacttgaaag |
262 |
Q |
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| T |
2827812 |
tgctatcttttgtttcccgtgctacctttttg---gtagagaggcatctaaccgtccaggttctaactctttcgttgaaaaaggatttaatacttggaag |
2827908 |
T |
|
| Q |
263 |
aaggtaaatagcgggaaaaattgt |
286 |
Q |
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||||||||||||||| |||||||| |
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| T |
2827909 |
aaggtaaatagcggggaaaattgt |
2827932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 306305 - 306185
Alignment:
| Q |
163 |
tgctatcttttgtttcccatgctacctttttgttggtagagaggcttctaaccgtctaggttctaacgttttcattgaaaaaggatttaatacttgaaag |
262 |
Q |
| |
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|||||||||||||||| | ||||||||||||| |||||||||| |||||||||| |||||||||| |||| |||||||||||||||||||||| ||| |
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| T |
306305 |
tgctatcttttgtttctcgtgctacctttttg---gtagagaggcatctaaccgtccaggttctaactctttcgttgaaaaaggatttaatacttggaag |
306209 |
T |
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| Q |
263 |
aaggtaaatagcgggaaaaattgt |
286 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
306208 |
aaggtaaatagcggggaaaattgt |
306185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 30343475 - 30343506
Alignment:
| Q |
163 |
tgctatcttttgtttcccatgctacctttttg |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
30343475 |
tgctatcttttgtttcccatgctacctttttg |
30343506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 10585910 - 10585941
Alignment:
| Q |
163 |
tgctatcttttgtttcccatgctacctttttg |
194 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10585910 |
tgctatcttttgtttcccatgctacctttttg |
10585941 |
T |
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