View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_high_2 (Length: 509)
Name: NF15185_high_2
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 39775493 - 39775977
Alignment:
| Q |
18 |
cttgtcgttataatgcctttcaatctattttgagttgtctcttgttggattgatcattgaaaacaaaaataatagcaatggttttattttgtggggtagt |
117 |
Q |
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| T |
39775493 |
cttgtcgttataatgcctttcaatctattttgagttgtcccttgttggattgatcattgaaaacaaaaataatagcaatggttttattttgtggggtagt |
39775592 |
T |
|
| Q |
118 |
ccttatttgatggatcgatggacatgaaatgtttgtgcaattgtgctgcattatttggatacccaacccaacaaagttcctttgaataaatcatcatgaa |
217 |
Q |
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| T |
39775593 |
ccttatttgatggatcgatggacatgaaatgtttgtgcaattgtgctgcattatttggatacccaacccaacaaagttcctttgaataaatcatcatgaa |
39775692 |
T |
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| Q |
218 |
aatgatttataccaataatcttcttgtctgatgattagtctgcatcttaccaattgttgacaatgacgaagattttttccacttaccaattcaaagctat |
317 |
Q |
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| T |
39775693 |
aatgatttataccaataatcttcttgtctgatgattagtctgcatcttaccaattgtcgacaatgacgaagatattttccacttaccaattcaaagctat |
39775792 |
T |
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| Q |
318 |
cgtataaaacaacgtaaccagacaagggatgtttgtttgtttcttacgtaaaggatgtgtatgctaagtgattacgtcatcaatgcgcccaagcaaatcc |
417 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775793 |
cgtataaaacaacgtaaccagacaagggatttttgtttgtttcttacgtaaaggatgtgtatgctaagtgattacgtcatcaatgcgcccaagcaaatcc |
39775892 |
T |
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| Q |
418 |
tcctcgtgcatcagacgatgatccataaatcacgcttagttagaatccttagcgggttcaaggacttttcccaaattctcctatg |
502 |
Q |
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| T |
39775893 |
tcctcgtgcatcagacgatgatccataaatcacgcttagttagaatccttagcgggttcaaggacttttcccaaattctcctatg |
39775977 |
T |
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