View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_high_6 (Length: 298)
Name: NF15185_high_6
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_high_6 |
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| [»] scaffold0271 (1 HSPs) |
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| [»] scaffold0640 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 41200208 - 41199935
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
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||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41200208 |
attatcctaaaattgatgtcctttgaaaataagtaggtccttccacttccaaattctaacttaggcttcttcaactaaatatttttttcctgcaaattgc |
41200109 |
T |
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| Q |
109 |
atctagtttcaagacaactaaatgtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200108 |
atctagtttcaagacaactaaatgtccatattgctgaaaactataaattttgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactga |
41200009 |
T |
|
| Q |
209 |
taagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaaca |
282 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41200008 |
taagaaagaatgaatcgtgtgatatgcatttattacgcaaaacatatgagaaatctaactgacattcaaaaaca |
41199935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 1041887 - 1041623
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||||||||| |
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| T |
1041887 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa-----------tcaactaaatatttttttcctgcaaattgc |
1041801 |
T |
|
| Q |
109 |
atctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
204 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041800 |
atctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
1041701 |
T |
|
| Q |
205 |
ctgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaaca |
282 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1041700 |
ctgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaaca |
1041623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 41192952 - 41192688
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||||||||| |
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| T |
41192952 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa-----------tcaactaaatatttttttcctgcaaattgc |
41192866 |
T |
|
| Q |
109 |
atctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
204 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41192865 |
atctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
41192766 |
T |
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| Q |
205 |
ctgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaaca |
282 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41192765 |
ctgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaaca |
41192688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 41407641 - 41407385
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||| |
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| T |
41407641 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgc |
41407544 |
T |
|
| Q |
109 |
atctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactg |
207 |
Q |
| |
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||||||||| ||||||||||||| ||||||||| | || | |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
41407543 |
atctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactg |
41407448 |
T |
|
| Q |
208 |
ataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
270 |
Q |
| |
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|| ||||||||||||| ||||| ||||| || |||||||||||| ||||||||||||||||| |
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| T |
41407447 |
attagaaagaatgaatagtgtgttatgctttaattacgcaaaactaatgagaaatctaactga |
41407385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 33323478 - 33323214
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || ||||||||||| |||||||||||| |
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| T |
33323478 |
attatcctaaaattgatgtcctttgaaaacaagtaggttcatccacttccaatta--aa-----------tcaactaaatatttttttcctgcaaattgc |
33323392 |
T |
|
| Q |
109 |
atctagtttcaagacaactaaatgtccatat----tgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
204 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323391 |
atctagtttcaagacaactaaatgtccatatatattgccgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaata |
33323292 |
T |
|
| Q |
205 |
ctgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaaaaca |
282 |
Q |
| |
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|||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33323291 |
ctgatacgaaagaatgaatcgtgtgatatgcatttattacgcaaaactgatgagaaatctaactgacattcaaaaaca |
33323214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 23857 - 24113
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccatccacttccaaattctaacttaggcttcttcaactaaatannnnnnncctgcaaattgc |
108 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||| |
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| T |
23857 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccatccacttccaaattcagactttggcttcttcaacta--tttttttttcctgcaaattgc |
23954 |
T |
|
| Q |
109 |
atctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcccaaatactg |
207 |
Q |
| |
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||||||||| ||||||||||||| ||||||||| | || | |||| ||||||||| ||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
23955 |
atctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcagttccaaatactg |
24050 |
T |
|
| Q |
208 |
ataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
270 |
Q |
| |
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|| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
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| T |
24051 |
attagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
24113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 3379 - 3549
Alignment:
| Q |
97 |
cctgcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcag |
195 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| | || | |||| ||||||||| ||| ||| ||||||||||||||||||||| |
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| T |
3379 |
cctgcaaattgcatctagttttaagacaactaaattgtccatattaccgaga----taaaatctgtcaactttcatactttttgttttgcagcaaggcag |
3474 |
T |
|
| Q |
196 |
tcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactga |
270 |
Q |
| |
|
| |||||||||||| ||||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||| |
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|
| T |
3475 |
ttccaaatactgattagaaagaatgaatagtgtgttatgctttaattacgcaaaactgatgagaaatctaactga |
3549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 3301 - 3342
Alignment:
| Q |
9 |
attattctaaaattgatgtcctttgaaaacaagtaggtccat |
50 |
Q |
| |
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||||| ||||||| ||||||||||||||||| |||||||||| |
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|
| T |
3301 |
attatcctaaaatggatgtcctttgaaaacatgtaggtccat |
3342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 16700352 - 16700452
Alignment:
| Q |
179 |
gttttgcagcaaggcagtcccaaatactgataagaaagaatgaatggtgtgatatgcatttattacgcaaaacagatgagaaatctaactgacattcaaa |
278 |
Q |
| |
|
||||||||||||| || |||||| | |||||||||||||| | | || ||||||||||||| ||||||| |||||||| ||||||||| |||| || |
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|
| T |
16700352 |
gttttgcagcaagtcaaacccaaaaaatgataagaaagaataa----tatggtatgcatttattatgcaaaactgatgagaagtctaactgatattcgaa |
16700447 |
T |
|
| Q |
279 |
aacat |
283 |
Q |
| |
|
||||| |
|
|
| T |
16700448 |
aacat |
16700452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 12001938 - 12001799
Alignment:
| Q |
100 |
gcaaattgcatctagtttcaagacaactaaat-gtccatattgctgaaaactataaattctgtcaaccttcctaccttttgttttgcagcaaggcagtcc |
198 |
Q |
| |
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||||||||||||||||||| || || | | || || |||||||||| |||| ||||| |||||||| | | || ||||| |||||||||||||||| | |
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| T |
12001938 |
gcaaattgcatctagtttctagtcagccagattgttcatattgctggaaaccataaaatctgtcaaaccttcttcctttcagtttgcagcaaggcagttc |
12001839 |
T |
|
| Q |
199 |
caaatactgataagaaagaatgaatggtgtgatatgcattt |
239 |
Q |
| |
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|||| |||||| | |||||| ||| | ||||||||||||| |
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|
| T |
12001838 |
caaaaactgat-acaaagaaataatagagtgatatgcattt |
12001799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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