View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_high_9 (Length: 259)
Name: NF15185_high_9
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 36466814 - 36467040
Alignment:
| Q |
18 |
caaatcattcaagtcttgtattaatttgttgaaccttcctcttttcttctcaatgagcaacttaatccatagcttattcccatcaacttttgctacctgc |
117 |
Q |
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| T |
36466814 |
caaatcattcaagtcttgtattaatttgttgaaccttcctcttttcttctcaatgagcaacttaatccatagcttattcccatcaacttttgctacctgc |
36466913 |
T |
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| Q |
118 |
acctcttcctatagaaagtaacagacccagcattactaaaaggacttataaatcatgaaactcatttagttaatcaaataaataaataaatgaatttata |
217 |
Q |
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| T |
36466914 |
acctcttcctatagaaagtaacagccccagcattactaaaaggacttataaatcatgaaactcatttagttaatc----aaataaataaatgaatttata |
36467009 |
T |
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| Q |
218 |
taaaacctgcaaccccattttattcatctca |
248 |
Q |
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| T |
36467010 |
taaaacctgcaaccccattttattcatctca |
36467040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 36495518 - 36495616
Alignment:
| Q |
37 |
attaatttgttgaaccttcctcttttcttctcaatgagcaacttaatccatagcttattcccatcaacttttgctacctgcacctcttcctatagaaag |
135 |
Q |
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| T |
36495518 |
attaatttcttgaaccctcctctcttgttctcaaagatcatcttaacccatagcttatttccatccattttttccacttgaacctcttcctatagaaag |
36495616 |
T |
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