View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_low_3 (Length: 462)
Name: NF15185_low_3
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 5399593 - 5400021
Alignment:
| Q |
16 |
gattttgatagagatgatgttgaacaggtacattaactaaacaaaattagtaatttgtttaattacttgttattttatgagttcaatgatatatttgttt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5399593 |
gattttgatagagatgatgttgaacaggtacattaactaaacaaaattagtaatttgtttaattacttgttattttatgagtttaatgatatatttgttt |
5399692 |
T |
|
| Q |
116 |
ttgtaaaattagttttacatgaaaatccattttcttactgcatttttaaaataactgcaaaatactggatttattttggtgcatgtcctcttttttgata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
5399693 |
ttgtaaaattagttttacatgaaaatccattttcttactgcatttttaaaataactgcaaaatactggatttatcttggtgcatgtcctctttttttata |
5399792 |
T |
|
| Q |
216 |
ctttattcacatttatgctattgtatttgtgcatgcaatcttactagtaaaacaaatagattttatctcgagtcatcggttcagtggtaagagtttgact |
315 |
Q |
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| T |
5399793 |
ctttattcacatttatgctattgtatttgtgcatgcaatcttactagtaaaacaaatagattttatctcgagtcatcggttcagtggtaagagtttgact |
5399892 |
T |
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| Q |
316 |
ttgtaaccttaagagacgaagtttgaatatccttagagacgattggtgtcactttaaattaggggataattt-cccctttcctcaaattgtttttnnnnn |
414 |
Q |
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| T |
5399893 |
ttgtaaccttaagagacgaagtttgaatatccttagagacgattggtgtcactttaaattaggggataatttccccctttcctcaaattgttttt-aaaa |
5399991 |
T |
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| Q |
415 |
nncctgtgcatgcaattttgtcatagtttt |
444 |
Q |
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| T |
5399992 |
aacctgtgcatgcaattttgtcatagtttt |
5400021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 12556936 - 12556897
Alignment:
| Q |
300 |
tggtaagagtttgactttgtaaccttaagagacgaagttt |
339 |
Q |
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| T |
12556936 |
tggtaagagtttgactttgtaacatcaagagacgaagttt |
12556897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 30519517 - 30519477
Alignment:
| Q |
299 |
gtggtaagagtttgactttgtaaccttaagagacgaagttt |
339 |
Q |
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| T |
30519517 |
gtggtaagagtttgattttgtaaacttaagaaacgaagttt |
30519477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 40585301 - 40585251
Alignment:
| Q |
294 |
gttcagtggtaagagtttgactttgtaaccttaagagacgaagtttgaata |
344 |
Q |
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| T |
40585301 |
gttcagtagtaagaatttgattttgtaactttaagagacgaagtttaaata |
40585251 |
T |
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