View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_low_4 (Length: 351)
Name: NF15185_low_4
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 6 - 335
Target Start/End: Complemental strand, 43225284 - 43224959
Alignment:
| Q |
6 |
agtagcaaaggggaaaattcatgatgaattataagcaaatattatttagaaacagccatataattgatgccacgaggttgtgggttgggacacatctgtt |
105 |
Q |
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| T |
43225284 |
agtagtaaaggggaaaattcatgatgaattataagcaaatattatttagaaacagccatataattgatgccacgaggttgtgggttgg-acacatctgtt |
43225186 |
T |
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| Q |
106 |
gtagatgaattgtcatttaaattatagtaataaattataattccttagccctttgtgttagaatctttaaatgcagtgatctttgtgtggcgaatcttta |
205 |
Q |
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| T |
43225185 |
gtagatgaattgtcatttaaattatagtaataaattataattccttagccctttgtgttagaatctttaaatgcagtgatctttgtgtggtgaatcttta |
43225086 |
T |
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| Q |
206 |
gctataagtcactcattatgttataaaacataataagattaatactgagtagaacataataccgaataattgtcaaaaagaagaacatgataccgatgat |
305 |
Q |
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| T |
43225085 |
gctataagtcactc---atgttataaaacataataagattaatactgagtagaacataataccgaataattgtcaaaaagaagaacatgataccgatgat |
43224989 |
T |
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| Q |
306 |
aagatgaatgtcatagatgcatgtatttag |
335 |
Q |
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| T |
43224988 |
aagatgaatgtcatagatgcatgtatttag |
43224959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 41652656 - 41652885
Alignment:
| Q |
17 |
ggaaaattcatgatgaattataagcaaatattatttagaaacagccatataattgatgccacgaggttg------tgggttgggacacatctgttgtaga |
110 |
Q |
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| T |
41652656 |
ggaaaattcatgatgaattataagcaaatattatttagaaaaaggcatataattgatgccacgaggttgggacattgggttgg-acccatctgttgtaga |
41652754 |
T |
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| Q |
111 |
tgaattgtcatttaaattatagtaataaattataattccttagccctttgtgttagaa-tctttaaatgcagtgatctttgtgtggcgaatctttagcta |
209 |
Q |
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| T |
41652755 |
tgaattatcatttaaattata-------------attccttagctctttgtgtttgaaatctttaaatgtggtgatctttgtgtggcgaatctttaacta |
41652841 |
T |
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| Q |
210 |
taagtcactcattatgttataaaacataataagattaatactga |
253 |
Q |
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| T |
41652842 |
taagtcactcattatgttataaaacataataagattaatactga |
41652885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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