View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15185_low_7 (Length: 290)
Name: NF15185_low_7
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15185_low_7 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 9804037 - 9803776
Alignment:
| Q |
18 |
aggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttgag |
117 |
Q |
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| T |
9804037 |
aggtcaactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaactttat |
9803938 |
T |
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| Q |
118 |
aggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaacggtgatgtagactctgatttgaat |
217 |
Q |
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| T |
9803937 |
agattttatcgtcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggatgtaatggtgatgtagactctgatttgaat |
9803838 |
T |
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| Q |
218 |
aactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
279 |
Q |
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| T |
9803837 |
aactcgcatgatttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
9803776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 9828821 - 9828638
Alignment:
| Q |
76 |
atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc |
175 |
Q |
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| T |
9828821 |
atcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtca |
9828722 |
T |
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| Q |
176 |
caagatggaggatgtaacggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcg |
262 |
Q |
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| T |
9828721 |
caagatggaggacataatggtgatgtcgactctgatttgaataacttacaagatttacaagatc---atagcaaggattctgattcg |
9828638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 9755346 - 9755197
Alignment:
| Q |
76 |
atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc |
175 |
Q |
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| T |
9755346 |
atcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtca |
9755247 |
T |
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| Q |
176 |
caagatggaggatgtaacggtgatgtagactctgatttgaataactcgca |
225 |
Q |
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| T |
9755246 |
caagatggaggacgtaatggtgatgtggactctgatttgaatgactcgca |
9755197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 9755389 - 9755356
Alignment:
| Q |
18 |
aggtccactatcagcaaagtattccaacaaatga |
51 |
Q |
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| T |
9755389 |
aggtcaactatcagcaaagtattccaacaaatga |
9755356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 9828864 - 9828831
Alignment:
| Q |
18 |
aggtccactatcagcaaagtattccaacaaatga |
51 |
Q |
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| T |
9828864 |
aggtcaactatcagcaaagtattccaacaaatga |
9828831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 7367 - 7142
Alignment:
| Q |
18 |
aggtccactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttgag |
117 |
Q |
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| T |
7367 |
aggtcaactatcatcaaagtattccaacaaatgaatatgctcgtgataatgatgctggatcaatagaggacttatcacaaagtgaagaaggaaacttgaa |
7268 |
T |
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| Q |
118 |
aggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatg--gaggatgtaacggtgatgtagactctgatttga |
215 |
Q |
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| T |
7267 |
aggttttattgttgatgattttgatatatctagctgtgaagtcgcctctagcaagtcacaagaaggagaggacgtaacggtgatgtggactctgatttaa |
7168 |
T |
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| Q |
216 |
ataactcgcatgatttacaatatcat |
241 |
Q |
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| T |
7167 |
atgactcgcatgatttacaagatcat |
7142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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