View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15185_low_8 (Length: 262)

Name: NF15185_low_8
Description: NF15185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15185_low_8
NF15185_low_8
[»] chr4 (1 HSPs)
chr4 (226-262)||(25735579-25735615)
[»] chr1 (5 HSPs)
chr1 (59-114)||(45691579-45691634)
chr1 (65-108)||(28165109-28165152)
chr1 (59-105)||(51120694-51120740)
chr1 (62-111)||(36437180-36437229)
chr1 (62-114)||(32715807-32715859)
[»] chr7 (1 HSPs)
chr7 (62-112)||(46101155-46101205)
[»] chr2 (1 HSPs)
chr2 (59-114)||(13027917-13027972)
[»] chr8 (1 HSPs)
chr8 (58-100)||(30105596-30105638)
[»] chr6 (4 HSPs)
chr6 (62-116)||(2950135-2950189)
chr6 (62-100)||(5428831-5428869)
chr6 (62-100)||(24789915-24789953)
chr6 (62-111)||(606598-606647)
[»] scaffold1809 (1 HSPs)
scaffold1809 (62-111)||(478-527)
[»] chr5 (2 HSPs)
chr5 (62-111)||(3629190-3629239)
chr5 (62-114)||(19090223-19090275)
[»] chr3 (1 HSPs)
chr3 (62-111)||(46918444-46918493)


Alignment Details
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 25735615 - 25735579
Alignment:
Q  226 acgtagtggaaattttctgcagttccatgaagtcgtg 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  25735615 acgtagtggaaattttctgcagttccatgaagtcgtg 25735579  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 45691579 - 45691634
Alignment:
Q  59 attattaattgttgtaattttttgactatttttacaaatatagccttatagaaatt 114  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||    
T  45691579 attattagttgttgtaattttttgaatatttttacaaatataccctcataaaaatt 45691634  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 28165109 - 28165152
Alignment:
Q  65 aattgttgtaattttttgactatttttacaaatatagccttata 108  Q
    |||| |||||||||||||| |||||||||||||||| |||||||    
T  28165109 aattattgtaattttttgaatatttttacaaatatacccttata 28165152  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 51120694 - 51120740
Alignment:
Q  59 attattaattgttgtaattttttgactatttttacaaatatagcctt 105  Q
    ||||||||||||||||||| ||| | |||||||||||||||| ||||    
T  51120694 attattaattgttgtaattctttaaatatttttacaaatataacctt 51120740  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 36437180 - 36437229
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaa 111  Q
    |||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  36437180 attaattgttgtaactttttaaacatttttacaaatatacccttatagaa 36437229  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 32715859 - 32715807
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaaatt 114  Q
    |||| ||||||||||||||||| | |||||||||||||| ||| ||| |||||    
T  32715859 attagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatt 32715807  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 46101155 - 46101205
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaaa 112  Q
    ||||||||||||| |||||| | |||||||||||||||| |||||||||||    
T  46101155 attaattgttgtagttttttaaatatttttacaaatatacccttatagaaa 46101205  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 13027972 - 13027917
Alignment:
Q  59 attattaattgttgtaattttttgactatttttacaaatatagccttatagaaatt 114  Q
    |||||| ||||||| || ||||||| |||||||||||||||| ||| |||||||||    
T  13027972 attattcattgttgcaactttttgaatatttttacaaatatatcctcatagaaatt 13027917  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 30105596 - 30105638
Alignment:
Q  58 tattattaattgttgtaattttttgactatttttacaaatata 100  Q
    |||||||||||||||||||||||| |  |||||||||||||||    
T  30105596 tattattaattgttgtaattttttaaacatttttacaaatata 30105638  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 2950135 - 2950189
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaaattgt 116  Q
    |||||||  ||||||||||||| |||||||||||||||| ||| ||| |||||||    
T  2950135 attaattaatgtaattttttgaatatttttacaaatatatcctgataaaaattgt 2950189  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 5428869 - 5428831
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatata 100  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  5428869 attaattgttgtaattttttaaatatttttacaaatata 5428831  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 24789915 - 24789953
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatata 100  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  24789915 attaattgttgtaattttttaaatatttttacaaatata 24789953  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 606598 - 606647
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaa 111  Q
    |||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  606598 attaattgttgtaactttttaaacatttttacaaatatacccttatagaa 606647  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 478 - 527
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaa 111  Q
    |||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  478 attaattgttgtaactttttaaagatttttacaaatatacccttatagaa 527  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 3629190 - 3629239
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaa 111  Q
    |||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  3629190 attaattgttgtaactttttaaacatttttacaaatataaccttatagaa 3629239  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 19090223 - 19090275
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaaatt 114  Q
    |||||||||||||||||||| | |||||||| ||||||| ||| | |||||||    
T  19090223 attaattgttgtaatttttttaatatttttataaatatatcctcaaagaaatt 19090275  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 46918444 - 46918493
Alignment:
Q  62 attaattgttgtaattttttgactatttttacaaatatagccttatagaa 111  Q
    |||||||||||||| ||||| |  ||||||||||||||| ||||||||||    
T  46918444 attaattgttgtaaatttttaaacatttttacaaatatacccttatagaa 46918493  T

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