View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15186_high_1 (Length: 586)
Name: NF15186_high_1
Description: NF15186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15186_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 84 - 215
Target Start/End: Original strand, 14315959 - 14316090
Alignment:
| Q |
84 |
ccaagtttggttgttgttcatttgtgaagcggtggttgcgagtttgtgtggagagtggttgaaggaatagtcgcgagttgatggatggatggtgggtgtg |
183 |
Q |
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| T |
14315959 |
ccaagtttggttgttgttcatttgtgaggcggtggttgtgagtttgtgtggagagtggttgaaggaatagtcgcgagttgatggatggatggtgggtgtg |
14316058 |
T |
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| Q |
184 |
tccgtaatttgattcttaactcttcagttata |
215 |
Q |
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| T |
14316059 |
tccgtaatttgattcttaagtcttcagttata |
14316090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 416 - 579
Target Start/End: Original strand, 14316405 - 14316566
Alignment:
| Q |
416 |
aaatgagatacaacctcaaattttttactttgaagtgannnnnnnnatcattccattactttacaacaaagaaaaaatagttcccctacaagaaagatat |
515 |
Q |
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| T |
14316405 |
aaatgagatacaacctcaaattttttactttgatgtgaattttt--atcattcgattacttgacaacaaggaaaaaatagttcccctacgagaaagatgt |
14316502 |
T |
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| Q |
516 |
ttataacatttcattgatagtaatagtttaaatacaacaagagataaataatgagattaactat |
579 |
Q |
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| T |
14316503 |
ttataacattttattgatagtaatagttttaatacaacaagagataaataatggaattaactat |
14316566 |
T |
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