View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15186_high_2 (Length: 377)
Name: NF15186_high_2
Description: NF15186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15186_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 33879506 - 33879865
Alignment:
| Q |
1 |
accaaataatatatatgcaaatgtgtcaagtattgaacataaataatcttacttttgcactgagttttgcacataggagaatcacaatcaagataacaaa |
100 |
Q |
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| T |
33879506 |
accaaataatatatatgcaaatgtgtcaagtattgaacataaataatcttacttttgcactgagttttgcacataggagaatcacaatcaagataacaaa |
33879605 |
T |
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| Q |
101 |
ctttttccctagggttagctggtgatcttgaaggacattgagcagggcaaggtagtttcttgagaaaacaacggctcttacggttggtacatgtttgagt |
200 |
Q |
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| T |
33879606 |
ctttttccctagggttagctggtgatcttgaaggacattgagcagggcaaggtagtttcttgagaaaacaacggctcttacggttggtacatgtttgagt |
33879705 |
T |
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| Q |
201 |
atcaacattaatacacatcacacatgatgatacaaatnnnnnnnnnnnnnnnnnnnncattaagcatttgttgttgtttgagaaatccatgatgattttc |
300 |
Q |
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| T |
33879706 |
atcaacattaatacacatcacacatgatgatacaaataaaaagaaaaacaaaacaaacattaagcatttgttgttgcttgagaaatccatgatgattttc |
33879805 |
T |
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| Q |
301 |
tcttgtttgatagatacaattaaagatcaatgtagcctcaccttatatacactcattttg |
360 |
Q |
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| T |
33879806 |
tcttgtttgatagatacaatgaaagatcaatgtagcctcaccttatatacactcattttg |
33879865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 359
Target Start/End: Original strand, 33875235 - 33875593
Alignment:
| Q |
4 |
aaataatatatatgcaaatgtgtcaagtattgaacataaataatcttacttttgcactgagttttgcacataggagaatcacaatcaagataacaaactt |
103 |
Q |
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| T |
33875235 |
aaataatatataagcaaatgtgtcaagtattgaacataaataatcttacttttgcactgagttttgcacacaggagaatcacaatcaagatagcaaactt |
33875334 |
T |
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| Q |
104 |
tttccctagggttagctggtgatcttgaaggacattgagcagggcaaggtagtttcttgagaaaacaacggctcttacggttggtacatgtttgagtatc |
203 |
Q |
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| || | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33875335 |
tgtcttttgggttagctggtgatcttgaagggcactgagcagggcaaggtagtttcttgagaaaacaacggctcttacggttggtacatgtttgagtatc |
33875434 |
T |
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| Q |
204 |
aacattaatacacatcacacatgatgatacaaatnnnnnnnnnnnnnnnnnnnncattaagcatttgttgttgtttgagaaatccatgatg---attttc |
300 |
Q |
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| T |
33875435 |
aacattaatacacatcacacatgatgatacaaaaacaaataaacacagaacaagcattaagcatttgttgttacttgagaaatccatgatgataattttc |
33875534 |
T |
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| Q |
301 |
tcttgtttgatagatacaattaaagatcaatgtagcctcaccttatatacactcatttt |
359 |
Q |
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| T |
33875535 |
tcttgtttgagagatacaatgaaagatcaatgtagcctcaccttatatacactcatttt |
33875593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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