View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15186_low_2 (Length: 561)
Name: NF15186_low_2
Description: NF15186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15186_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 39 - 545
Target Start/End: Original strand, 49866542 - 49867046
Alignment:
| Q |
39 |
ataggttcactagatgcagtaagcaaatatgacatgttgagaataggaggtgaagttaaatggcaaatatgacatattgatgatgtccatccatgcatgt |
138 |
Q |
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| T |
49866542 |
ataggttcactagatgcagtaagcaaatatgt-atgttgagaataggaggtgaagttaaatggcaaatatgacatattgatgatgtccatccatgcatgt |
49866640 |
T |
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| Q |
139 |
agatgaacatcattaaaaacacgagttttgcatccgtaaaagatagtcatctggcggctggcagatgttagcccatgttgactactgtcaatatcaaaat |
238 |
Q |
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| T |
49866641 |
agatgaacatcattaaaaacacgagttttgcatccgtaaaa-atagtcatctggcggctggcagatgttagcccatgttgactactgtcaatatcaaaat |
49866739 |
T |
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| Q |
239 |
gcataacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaattattattattcttggtgttctctttatcagacaatacaaatt |
338 |
Q |
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| T |
49866740 |
gcataacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaattattattattgttggtgttctctttatcagacaatacaaatt |
49866839 |
T |
|
| Q |
339 |
gttcttcacacaataatacacaggtttctagccaatacaattattcttctttcatgcatggattggtattccaaagtaggactatatgacttgaacatta |
438 |
Q |
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| T |
49866840 |
gttcttcacacaataatacacaggtttctagccaatacaattattcttctttcatgcatggattggtattccaaagtaggactatatgacttgaacatta |
49866939 |
T |
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| Q |
439 |
gttccataagttccccttacatttcatatattctacacaagaatctacaataaacatatttaggtttctagtagagtgcatgtgataataaatttgagag |
538 |
Q |
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| T |
49866940 |
gttccataagttccccttacatttcatatattctacacaagaatctacaataaacatatttaggtttctagtagagtgcatgtgataataaatttgagaa |
49867039 |
T |
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| Q |
539 |
ccttctg |
545 |
Q |
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| T |
49867040 |
ccttctg |
49867046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 145 - 295
Target Start/End: Original strand, 49873333 - 49873482
Alignment:
| Q |
145 |
acatcattaaaaacacgagttttgcatccgtaaaagatagtcatctggcggctggcagatgttagcccatgttgactactg-tcaatatcaaaatgcat- |
242 |
Q |
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||||||| ||||||| ||| || | ||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
49873333 |
acatcatcaaaaacatgagcttgacctccataaaagatagtcatctggcggctggcagctgttagcccatgttgactactgctcaatgccaaaatgcata |
49873432 |
T |
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| Q |
243 |
aacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaa |
295 |
Q |
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| T |
49873433 |
aagtcaatcaactt---ctttttccaaggtaaagggagtgaaaataaatagaa |
49873482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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