View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15186_low_4 (Length: 203)
Name: NF15186_low_4
Description: NF15186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15186_low_4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 48075778 - 48075677
Alignment:
| Q |
102 |
atggtataattatgactaaaccaaatagtaaagaaaacaaaaactatgtatttatacccnnnnnnntatatatcaatggatacatgatatataaaatgat |
201 |
Q |
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| T |
48075778 |
atggtataattatgactaaaccaaatagtaaagaaaacaaaaactatgtatttatacccaaaaaaatatatatcaatggatacatgatatataaaatgat |
48075679 |
T |
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| Q |
202 |
ga |
203 |
Q |
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|| |
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| T |
48075678 |
ga |
48075677 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 48075676 - 48075579
Alignment:
| Q |
106 |
tataattatgactaaaccaaatagtaaagaaaacaaaaactatgt-atttatacccnnnnnnntatatatcaatggatacatgatatataaaatgatga |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
48075676 |
tataattatgactaaaccaaatagtagagaaaacaaaaatgatgtaatttata-ccaaaaacaaatatatcaatggatacatgatatataaaacgatga |
48075579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 48075578 - 48075540
Alignment:
| Q |
106 |
tataattatgactaaaccaaatagtaaagaaaacaaaaa |
144 |
Q |
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|||| ||||||||||||||||||||| |||||||||||| |
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| T |
48075578 |
tatagttatgactaaaccaaatagtagagaaaacaaaaa |
48075540 |
T |
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