View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15187_high_1 (Length: 543)
Name: NF15187_high_1
Description: NF15187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15187_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 13 - 527
Target Start/End: Complemental strand, 2624625 - 2624111
Alignment:
| Q |
13 |
aatataaaagatcacaattcaattgcgacaaatatctatatagaaaaaattgctacctgtgattctatcgtatacatcagccgcagattcaccatttgga |
112 |
Q |
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| T |
2624625 |
aatataaaagatcacaattcaattgcgacaaatatctatatagaaaaaattgctacctgtgattctatcgtatacatcagccgcagattcaccatttgga |
2624526 |
T |
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| Q |
113 |
aatcggtaaaagaaacgaccataaagatggcgttgcgctttttcaactttcatcaactctctattttgaaaattcccttacataacataaatcacaaaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624525 |
aatcggtaaaagaaacgaccataaagatggcgttgcgctttttcaactttcatcaactctctattttgaaaattcccttacataacataaatcacaaaga |
2624426 |
T |
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| Q |
213 |
aacaataaataaatttgagaacataccaatatacaagacagaaaactaaactaggtagaaaaacttttgaattagttaattaattattcaataccgaaat |
312 |
Q |
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| T |
2624425 |
aacaataaataaatttgagaacatatcaatatacaagacagaaaactaaattaggtagaaaaacttttgaattagttaattaattattcaataccgaaat |
2624326 |
T |
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| Q |
313 |
cttgttctctaatccgaggctcttctctgaatccagcaattctcgaacgttcaaaaggacgagctaagctttgcaaagtttcgagagtccttctatatgg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624325 |
cttgttctctaatccgaggctcttctctgaatccagcaattctcgaacgttcaaaaggacgagctaagctttgcaaagtttcgagagtccttctatatgg |
2624226 |
T |
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| Q |
413 |
agacacataaaagtagagttgccaattttcatcactatctttttcaatcatgttcttgattctttgtccacattcctctgcttgaaccctacccctattt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624225 |
agacacataaaagtagagttgccaattttcatcactatctttttcaatcatgttcttgattctttgtccacattcctctgcttgaaccctacccctattt |
2624126 |
T |
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| Q |
513 |
gtgaggcctattttg |
527 |
Q |
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||||||||||||||| |
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| T |
2624125 |
gtgaggcctattttg |
2624111 |
T |
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