View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15187_high_6 (Length: 229)
Name: NF15187_high_6
Description: NF15187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15187_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 17782276 - 17782469
Alignment:
| Q |
19 |
cattatgatatgtaacgtagacatatattcannnnnnn--ctatagttcatcattagcaatgtttacaattggattattttcaacttgtaaatgttttgg |
116 |
Q |
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| T |
17782276 |
cattatgatatgtaacgtagacatatattcatttttttttctatagttcatcattagcaatgtttacaattggattattatcaacttgtaaatgttttgg |
17782375 |
T |
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| Q |
117 |
atgcgcacagaatgtgttgtgctgacatagcttgaaactgttttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
210 |
Q |
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| T |
17782376 |
atgcgcacaaaatgtgttgtgctgacatagcttgaaactgttttggattctttgaagatatattcaagttgttgccactgttattgtgatatcc |
17782469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 42539287 - 42539322
Alignment:
| Q |
110 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
146 |
Q |
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| T |
42539287 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
42539322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 1330266 - 1330231
Alignment:
| Q |
110 |
gttttggatgcgcacagaatgtgttgtgctgacatag |
146 |
Q |
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| T |
1330266 |
gttttggatgcgcacagaatgt-ttgtgctgacatag |
1330231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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