View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15187_low_2 (Length: 455)
Name: NF15187_low_2
Description: NF15187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15187_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 17107391 - 17107791
Alignment:
| Q |
1 |
ttagaagaagaacatgcatgggagttgttttccaaacatgcattcaaaaatctagagagttctcgaataaccattggcccaggagtttttgagttaattg |
100 |
Q |
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| T |
17107391 |
ttagaagaagaacatgcatgggacttgttttccaaacatgcattcaaaaatctagagagttctcgaataaccattggcccaggagtttttgagttaattg |
17107490 |
T |
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| Q |
101 |
ccgaagatgtcatgaggaaatgtaacggattacctttagctttggaagcaattgggcgtctcttgagcgtacattcatccttcaaggactggagtgagat |
200 |
Q |
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| T |
17107491 |
ccgaagatgtcatgaggaaatgtaacggattacctttagctttggaagcaattgggcgtctcttgagcgtacattcatccttcaaggactggagtgagat |
17107590 |
T |
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| Q |
201 |
atcgaaaagcggtatatggaacttaccaggagaaagacgaattgtccctgctttgatgttaagttatcaaaagcttccatatgatcttaagagatgtttt |
300 |
Q |
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| T |
17107591 |
atcgaaaagcggtatatggaacttaccaggagaaacacgaattgtccctgctttgatgttaagttatcaaaagcttccatatgatcttaagagatgtttt |
17107690 |
T |
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| Q |
301 |
gggtactgtgcattattccctaaaggctacctatttgacaaggatgatttaattttactatggacggctgaaaactttctccctggacaaaagaagggtg |
400 |
Q |
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| T |
17107691 |
gggtactgtgcattattccctaaaggctacctatttgacaaggatgatttaattttactatggacggctgaaaactttctccctggacaaaagaagggtg |
17107790 |
T |
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| Q |
401 |
a |
401 |
Q |
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| T |
17107791 |
a |
17107791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 17107789 - 17107859
Alignment:
| Q |
369 |
tgaaaactttctccctggacaaaagaagggtgagtcgttctttaaccatctactgtcaatatcatttttcc |
439 |
Q |
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| T |
17107789 |
tgaaaactttctccctggacaaaagaagggtgagtcgtactttaaccatctactgtcaatatcatttttcc |
17107859 |
T |
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