View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15187_low_3 (Length: 440)
Name: NF15187_low_3
Description: NF15187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15187_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 48017271 - 48017681
Alignment:
| Q |
16 |
acagttataaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtcttcactacttatactagnnnnnnnngtagg |
115 |
Q |
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| T |
48017271 |
acagttaaaaaatatttgggcgaaaacaatttgtagttaatttttattttgaaaagtgtactttaaagtcttcactacttatactagaaaaaaggtaggg |
48017370 |
T |
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| Q |
116 |
ggaaaacaacatattgacaatataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattcaaatgttaccatttccagtcatgtttta |
215 |
Q |
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| T |
48017371 |
ggaaaacaacatattgacaaaataaaaattgggggaaaattgagcttggcatttgatatattaaagtcattcaaatgttaccatttccagtcatgtttta |
48017470 |
T |
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| Q |
216 |
tgcactcaatcgacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaattttatatttacgtacaagtaaagaatatgtaa |
315 |
Q |
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| T |
48017471 |
tgcactcaatcaacaaacaagaaggacgtaagtggcagaaacaagaatggaaatggctcaacaacaattttatatttacgtacaagtaaagaatatgtaa |
48017570 |
T |
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| Q |
316 |
catgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtact-aactgga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48017571 |
catgaaactagctatcagagaaagatgacttggacgtgaattaactagctaattaattttagaattatactacatatatataattaagtactaaactgga |
48017670 |
T |
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| Q |
415 |
atgaaagaaat |
425 |
Q |
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| T |
48017671 |
atgaaagaaat |
48017681 |
T |
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