View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15187_low_4 (Length: 307)
Name: NF15187_low_4
Description: NF15187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15187_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 31821796 - 31822070
Alignment:
| Q |
19 |
gtataaacttgttattaaggttcaaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatg |
118 |
Q |
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| T |
31821796 |
gtataaacttgttattaaggttcaaaccaagagttctacttgagaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatg |
31821895 |
T |
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| Q |
119 |
ggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctctattttcagaattgaggtttgtctt |
218 |
Q |
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| T |
31821896 |
ggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaaagagcttgaacaaaactggttctctctctattttcagaattgaggtttgtctt |
31821995 |
T |
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| Q |
219 |
ctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataat |
293 |
Q |
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| T |
31821996 |
ctttaactttttctctttgtggtcaaaagtagggaatatattgatgccaacataatgattaatcacaagtataat |
31822070 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 35688742 - 35688829
Alignment:
| Q |
61 |
agaagcttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
148 |
Q |
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| T |
35688742 |
agaagattagagggaagaggttaatgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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