View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15188_high_10 (Length: 312)

Name: NF15188_high_10
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15188_high_10
NF15188_high_10
[»] chr1 (1 HSPs)
chr1 (1-295)||(52518206-52518500)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 52518206 - 52518500
Alignment:
Q  1 tataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataacaggaatcctgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52518206 tataattacatcttactttttcaaacccaccacgagaagtcacttcaacaaagaggcgatgtaaatccaattcccttcccccaataacaggaatcctgca 52518305  T
Q  101 ataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactagatgctgagactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52518306 ataaaattccaaatgttttttgaagttgcaaagttatacaagtaaatggcattaatagtgtatagtatctccaaaaatgcaaaactagatgctgagactg 52518405  T
Q  201 cactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacataacaaacatggaccctttg 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52518406 cactgctaagccataatttgtttaccacagtgcctggtcccatccaactagaaaaccatttatatccagaaaacataacaaacatggaccctttg 52518500  T

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