View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_high_14 (Length: 271)
Name: NF15188_high_14
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 7067891 - 7067767
Alignment:
| Q |
131 |
ctctctgatcacaattccaacctcaaaatcttaactttcaccctctactacccttttcctgattttgcttctagggtttgttcatgttctttgaagtaca |
230 |
Q |
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| T |
7067891 |
ctctctgatcacaattccaacctcaaaatcttaactttcatcctctactacccttttcctgattttgcttctagggtttgttcatgttctttgaagtaca |
7067792 |
T |
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| Q |
231 |
atgctgagtttcagaagcttataag |
255 |
Q |
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| T |
7067791 |
atgctgagtttcagaagcttataag |
7067767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7068023 - 7067976
Alignment:
| Q |
1 |
ctctaccttttccttctttgtgcatttcctctgcatcctagggttatg |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7068023 |
ctctaccttttccttctttgtgcatttcctctgcatcctagggttatg |
7067976 |
T |
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