View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_high_23 (Length: 231)
Name: NF15188_high_23
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 39812434 - 39812664
Alignment:
| Q |
1 |
atactaggaagttcctatattttacaatatgtactattttcttcgttgtaatcaagacattggaaaaataaatgacgttgtgattctttgttataatgtt |
100 |
Q |
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| T |
39812434 |
atactaggaagttcctatattttacaacatgtactattttcttagttgtaatcaagacattggaaaaataaatgacgttgtgattctttgttataatgtt |
39812533 |
T |
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| Q |
101 |
aggccctcaacaatggtttgcttgtggatcctcatgatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatgagtg |
200 |
Q |
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| T |
39812534 |
aggccctcaacaatggtttgcttgtggatcctcatgatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatgagtg |
39812633 |
T |
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| Q |
201 |
cagaaacaatggttggaagaatatacacctt |
231 |
Q |
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| T |
39812634 |
cagaaacaatggttggaagaatatacacctt |
39812664 |
T |
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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 15800518 - 15800651
Alignment:
| Q |
97 |
tgttaggccctcaacaatggtttgcttgtggatcctcatgatcatcaagcaattgctgatgcattactcaagcttttatcagagaaaaacctatggcatg |
196 |
Q |
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| T |
15800518 |
tgttaggctctcaataacggtttgcttgtggaccctcacgatcagcaagcaattactaatgcattgctcaagttgttgtcagagaaaaacctgtggcatg |
15800617 |
T |
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| Q |
197 |
agtgcagaaacaatggttggaagaatatacacct |
230 |
Q |
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| T |
15800618 |
actgcagaaaaaatggctggaagaatatacacct |
15800651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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