View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_high_3 (Length: 527)
Name: NF15188_high_3
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 37279095 - 37278736
Alignment:
| Q |
10 |
attatactataaaatgttcgcactaaactgtttatgaaccaaagagaacaatttcatatggctcaaatatgttgattcatcacagagtttctatggcgat |
109 |
Q |
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| T |
37279095 |
attatactttaaaatgttcgcactaaactgtttatgaaccaaagagaacaatttcatatggctcaaatatgttgattcatcacagagtttctatggcgat |
37278996 |
T |
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| Q |
110 |
gtatattaaggaaacaacttgagaaatcattggctgttatattgggcttcatgtcatttgctattctattagcagaggctaccatactacccagtggagt |
209 |
Q |
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| T |
37278995 |
gtatattaaggaaacaacttgagaaatcattggctgttatattgggcttcatgtcatttgctattctattagcagaggctaccatactacccagtggagt |
37278896 |
T |
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| Q |
210 |
tgacttgtctcttttctctatcctagtacatgctgcaggacacacagaagtgcttgtgcaggtgatatttatagacatgttcctatgtataatgtattcc |
309 |
Q |
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| T |
37278895 |
tgacttgtctcttttctctatcctagtacatgctgcaggacacacagaagtgcttgtacaggtgatatttatagacatgttcctatgtataatgtattcc |
37278796 |
T |
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| Q |
310 |
tatgtataatgtataatgtgttcctatttatagacactaatgtctttgaaaacatattag |
369 |
Q |
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| T |
37278795 |
tatgtataatgtataatgtgttcctatttatagacactaatgtctttgaaaacatattag |
37278736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 37278673 - 37278594
Alignment:
| Q |
432 |
cattgtttgattcttttcacagttagctgctttcgtccctttgatgtatatgtgtgtttgtacatattattccttgttta |
511 |
Q |
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| T |
37278673 |
cattgtttgattcttttcacagttagctgctttcgtccctttgatgtatatgtgtgtttgtacatattattccttgttta |
37278594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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