View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_high_4 (Length: 524)
Name: NF15188_high_4
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 180 - 506
Target Start/End: Original strand, 20142309 - 20142635
Alignment:
| Q |
180 |
atcatacccaatagcatttccttgtagcaattacaatcttgttttcacagtgaaacactaaagtggtgaaaatgtatcaccatcatttaatcattgaagt |
279 |
Q |
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| T |
20142309 |
atcatacccaatagcatttccttgtagcaattacaatcttgttttcacagtgaaacactaaagtggtgaaaatgtatcaccatcatttaatcattgaagt |
20142408 |
T |
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| Q |
280 |
ttctatctctgccaaatattgttgtaatagttatatttatgttgctgaatcactcactagtgggatatattacctccatcttttgaatattatgatcaac |
379 |
Q |
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| T |
20142409 |
ttctatctctgccaaatattgttgtaatagttatatttatgttgctgaatcactcactagtgggatatattacctccatcttttgaatattatgatcaac |
20142508 |
T |
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| Q |
380 |
tccgttttgtgagaagtgatgccgccaagctcaactccttttttgaagacgaaatggcatcaaacatcaaactcgattcattttcaagagagacaattac |
479 |
Q |
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| T |
20142509 |
tccgttttgtgagaagtgatgtcgccaagctcaactccttttttgaagacgcaatggcatcaaacatcaaactcgattcattttcaagagagacaattac |
20142608 |
T |
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| Q |
480 |
atcaagcatcaagcccaactcctttat |
506 |
Q |
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| T |
20142609 |
atcaagcatcaagcccaactcctttat |
20142635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 20140975 - 20141160
Alignment:
| Q |
4 |
atgtcgaagaaaattggtgcatttttgttatctttattggaaggtatacaaagaacatcgctgaatttatttgattttgaaatcacattattccgaaaga |
103 |
Q |
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| T |
20140975 |
atgtcgaagaaaattggtgcatttttgttatctttattggaaggtatacaaagaacatcgctgaacttatttgattttgaaatcacattattccgaaaga |
20141074 |
T |
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| Q |
104 |
tttcgctatttggatttaaactctttagggagagattgactaagttttaagtcccgtcatatgggaatatcttgccatcataccca |
189 |
Q |
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| T |
20141075 |
tttcgctatttggatttaaactctttagggagagattgactaagttttaagtcccgtcatatgggaatatcttgccatcataccca |
20141160 |
T |
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