View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_high_6 (Length: 383)
Name: NF15188_high_6
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 4037971 - 4038328
Alignment:
| Q |
8 |
ataattctccaatttagtattatcatatacattagtactagtatgatcgcacttaaataattcttcaatttgatattttcatatgcatttgtatcagtat |
107 |
Q |
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| T |
4037971 |
ataattctccaatttagtattatcatatgcattagtactagtatgatcgcacttaaataattctccaatttgatattttcatacgcatttgtaccggtat |
4038070 |
T |
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| Q |
108 |
gatcgcatttaagttagagactaaacatcaatagaattttgttgttattactnnnnnnnnttaaacatgctaaaattagataaagatcatagatcacata |
207 |
Q |
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|||| || ||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
4038071 |
gatcccacctaagttagagactaaacattaatagaattttgttgttattactaaaaaaaattaagcatgttaaaattagataaagatcatagatcacata |
4038170 |
T |
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| Q |
208 |
atttagtttgtaccacataagaaatttggaagaagtggcaaatggtactgacaagttcaggattacaacactaatgacagagaataggatgaaattattc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4038171 |
atttagtttgtaccacataagaaatttggaagaagtggcaaatggtactgacaagttcaggattacaacactaatgacagagaatatgatgaaattattc |
4038270 |
T |
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| Q |
308 |
tcttcacacataaaacctcacatcagaaatccatgtaataccaagtcaaacaagctgc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4038271 |
tcttcacacataaaacctcacatcagaaatccatgtaataccaagtcaaacaagctgc |
4038328 |
T |
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