View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15188_low_1 (Length: 595)
Name: NF15188_low_1
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_1 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 72 - 579
Target Start/End: Complemental strand, 1212971 - 1212466
Alignment:
| Q |
72 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
171 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1212971 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
1212872 |
T |
|
| Q |
172 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcaaaactgcccaaggctccctga |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
1212871 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcagaactgcctaaggctccctga |
1212772 |
T |
|
| Q |
272 |
aattatatataaatcccaacaaagattcgannnnnnngctttattcagagagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1212771 |
aattatatataaatcccaacaaagattcgaattttttgcttcattc--agagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
1212674 |
T |
|
| Q |
372 |
tttgtgccaagccacattaactannnnnnnnnnnnnctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataag |
471 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1212673 |
tttgtgccaagccacattaactatttttctttttctctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataag |
1212574 |
T |
|
| Q |
472 |
ccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1212573 |
ccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaagc |
1212474 |
T |
|
| Q |
572 |
tgagagtt |
579 |
Q |
| |
|
|||||||| |
|
|
| T |
1212473 |
tgagagtt |
1212466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 1215933 - 1215872
Alignment:
| Q |
12 |
aaataatactaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
73 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1215933 |
aaataattctaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
1215872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 14286647 - 14286608
Alignment:
| Q |
81 |
cctaagccatcgcacccccgacctatgcctagggtcggcc |
120 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
14286647 |
cctaggccatcgcacccccgacctatgtctagggtcggcc |
14286608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 23763771 - 23763809
Alignment:
| Q |
76 |
tgggacctaagccatcgcacccccgacctatgcctaggg |
114 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
23763771 |
tgggacctaagctatcgcacccccaacctatgcctaggg |
23763809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 72 - 579
Target Start/End: Complemental strand, 14134 - 13628
Alignment:
| Q |
72 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
171 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14134 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
14035 |
T |
|
| Q |
172 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcaaaactgcccaaggctccctga |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
14034 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctctactcttaagcagaactgcctaaggctccctga |
13935 |
T |
|
| Q |
272 |
aattatatataaatcccaacaaagattcgannnnnnngctttattcagagagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13934 |
aattatatataaatcccaacaaagattcgaattttttgcttcattc--agagagacgagagatctaataccaagcctcttttctgaatcggtttgtagac |
13837 |
T |
|
| Q |
372 |
tttgtgccaag-ccacattaactannnnnnnnnnnnnctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataa |
470 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13836 |
tttgtgccaagcccacattaactatttttctttttctctatatccccactccaaatgaaattcgttatgcaccttcaagtctctttaaaaagagaaataa |
13737 |
T |
|
| Q |
471 |
gccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaag |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13736 |
gccaagagtaatcagagatgctatgaattaatatgctttggataacaaatttaactagttgtgttcttcctacaaatagataacagagaagcctttcaag |
13637 |
T |
|
| Q |
571 |
ctgagagtt |
579 |
Q |
| |
|
||||||||| |
|
|
| T |
13636 |
ctgagagtt |
13628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 30695929 - 30695882
Alignment:
| Q |
25 |
tagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaa |
72 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30695929 |
tagcttatcatagcaacaagatgcagcaaaaatgaaaacaattactaa |
30695882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 39482941 - 39482888
Alignment:
| Q |
72 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgat |
125 |
Q |
| |
|
|||||||| |||| ||| ||| ||| ||||||||| |||||||||||||||||| |
|
|
| T |
39482941 |
agcatgggccctaggccgtcgtaccaccgacctatacctagggtcggccttgat |
39482888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 81 - 120
Target Start/End: Complemental strand, 12027470 - 12027430
Alignment:
| Q |
81 |
cctaagccatcgcacccccgacctat-gcctagggtcggcc |
120 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
12027470 |
cctaagacatcgcacccccgacctatggcctagggtcggcc |
12027430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University