View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_12 (Length: 310)
Name: NF15188_low_12
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 2498143 - 2498433
Alignment:
| Q |
10 |
aagaatattgtgacatatgtatgtaactaaaaagatctgatcgaatatgtgtnnnnnnnnnnttatcttttttaatcgcttataaaaaactaaatttata |
109 |
Q |
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| T |
2498143 |
aagaatattgtg-catatgtatgtaactaaaaagatctgatcgaatatgtgtaaaaaaaa--ttatcttttttaatcgcttataaaaaactaaatttata |
2498239 |
T |
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| Q |
110 |
tannnnnnnnnnaatgttgcttctgatccccaaaatcttattaatactatcttagacccatattgctttct------------gctatgctatggtagat |
197 |
Q |
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| T |
2498240 |
t-tattttttttaatgttgcttctgatccccaaaatcttattaatactatcttagacccatattgctttcttttattactcctgctatgctatggtagat |
2498338 |
T |
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| Q |
198 |
aacttccaaaaacactgctttcagttataaagatgtgttcttggtttctagcaaaattagagcatctcatgcctattacacgaatataagaaaga |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2498339 |
aacttccaaaaacactgctttcagttataaagatgtgttcttgatttctagcaaaattagagcatctcatgcctattacacgaatataagaaaga |
2498433 |
T |
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