View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_18 (Length: 257)
Name: NF15188_low_18
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 700476 - 700239
Alignment:
| Q |
17 |
acttggccctaaattctg-tttcttcttcaaatgcttcaaggccatgtaatcatccaaagcatcactaggcacgctggtcaccaccccagtacctttatt |
115 |
Q |
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| T |
700476 |
acttggccctaaattctggtttcttcttcaaatgcttcaaggccatgtaatcatccggagcatcactaggcacgctggtcaccaccccagtacctttatt |
700377 |
T |
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| Q |
116 |
catcaaaatagacagcataggaagtacatatataacctcagttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagc |
215 |
Q |
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| T |
700376 |
catcaaaatagacagcataggaagtacaaatataacctcagttaacgcaagcggagacctaagtagaaggccgatcaaatcatgacctgtgagctcaagc |
700277 |
T |
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| Q |
216 |
aagcaagtgggttcctgaggtactcttgagtggttctg |
253 |
Q |
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| T |
700276 |
aagcaagtgggttcctgaggtactcttgagtggttctg |
700239 |
T |
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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 247
Target Start/End: Original strand, 23261688 - 23261878
Alignment:
| Q |
57 |
gccatgtaatcatccaaagcatcactaggcacgctggtcaccaccccagtacctttattcatcaaaatagacagcataggaagtacatatataacctcag |
156 |
Q |
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|||||||||||||| || ||||||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||||| |||||||||| |||| |
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| T |
23261688 |
gccatgtaatcatcaggagagtcactaggcacactggtcaccactccggtacctttatccatcaaaatagacaacataggaagcacatatataatctcat |
23261787 |
T |
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| Q |
157 |
ttaacgcaagcggagacctaagtggaaggccgatcaaatcatgacctgtgagctcaagcaagcaagtgggttcctgaggtactcttgagtg |
247 |
Q |
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| T |
23261788 |
tcaaggaaagaggagatttcacaggaagcccgatcaaatcctgacccgtaagctcaagcaaacaagtcggtttctgaggtaccctagagtg |
23261878 |
T |
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