View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15188_low_22 (Length: 242)
Name: NF15188_low_22
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 19743705 - 19743888
Alignment:
| Q |
10 |
gttttatcatattgtattggtatgctttttccgcatatgtccaatcataatatatctaattaagtttgatnnnnnnntaatctaattaagtttagatatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19743705 |
gttttatcatattgtattggtatgctttttccgcatatgtccaatcataatatatctaattaagtttgataaaaaaataatctaattaagtttagatatc |
19743804 |
T |
|
| Q |
110 |
tctacgtacatattttgtgaaatagtactatatatgatatgacaataatggaattagccgtctgtgcaaaaatcattgatatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19743805 |
tctacgtacatattttgtgaaatagtactatatatgatatgacaataatggaattaaccgtctgtgcaaaaatcattgatatat |
19743888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 19796383 - 19796200
Alignment:
| Q |
10 |
gttttatcatattgtattggtatgctttttccgcatatgtccaatcataatatatctaattaagtttgatnnnnnnntaatctaattaagtttagatatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19796383 |
gttttatcatattgtattggtatgctttttccgcatatgtccaatcataatatatctaattaagtttgataaaaaaataatctaattaagtttagatatc |
19796284 |
T |
|
| Q |
110 |
tctacgtacatattttgtgaaatagtactatatatgatatgacaataatggaattagccgtctgtgcaaaaatcattgatatat |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19796283 |
tctacgtacatattttgtgaaatagtactatatatgatatgacaataatggaattaaccgtctgtgcaaaaatcattgatatat |
19796200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 19814787 - 19814718
Alignment:
| Q |
11 |
ttttatcatattgtattggtatg----ctttttccgcatatgtccaatcataatatatctaattaagttt |
76 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19814787 |
ttttatcatattgtattggtatgttttttttttccgcatatatccaatcataatatatctaattaagttt |
19814718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 19745287 - 19745329
Alignment:
| Q |
193 |
taactattaaacttaacaaaaccaaatcctcccctttcttctc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19745287 |
taactattaaacttaacaaaaccaaatcctcccctttcttctc |
19745329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 19794519 - 19794477
Alignment:
| Q |
193 |
taactattaaacttaacaaaaccaaatcctcccctttcttctc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19794519 |
taactattaaacttaacaaaaccaaatcctcccctttcttctc |
19794477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 190
Target Start/End: Complemental strand, 19814702 - 19814636
Alignment:
| Q |
120 |
tattttgtgaaatagtactatatatgatatgacaataatggaattagccgtctgtgcaaaaatcattgata |
190 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
19814702 |
tattttgtgaaattgtactat----gatatgacaatactggaattagccgtctgtgcaaaaattattgata |
19814636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 19673477 - 19673525
Alignment:
| Q |
142 |
tatgatatgacaataatggaattagccgtctgtgcaaaaatcattgata |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
19673477 |
tatgatatgacaataatggaattagctgtctctgcaaaaattattgata |
19673525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University