View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_27 (Length: 211)
Name: NF15188_low_27
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 39812635 - 39812818
Alignment:
| Q |
9 |
agaagcaaaggttggaagaatatacaccttttctcgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaat |
108 |
Q |
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| T |
39812635 |
agaaacaatggttggaagaatatacaccttttctcgtggccggaacattgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaat |
39812734 |
T |
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| Q |
109 |
ggcaaactactactactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcactta |
192 |
Q |
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| T |
39812735 |
ggcaaactactactactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcactta |
39812818 |
T |
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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 15800635 - 15800806
Alignment:
| Q |
21 |
tggaagaatatacaccttttctcgtggccggaacactgccgaacttatttgacacgcgtggatgcgtgtagaatgaggcatccacaatggcaaactacta |
120 |
Q |
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| T |
15800635 |
tggaagaatatacacctattctcgtggcccgaacactgtcgtacttatttgactcgagtcgcggcttgcaggatgaggcatccacaatggcaaactacta |
15800734 |
T |
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| Q |
121 |
ctactgaagatgatgtagatgttgaagagtctttcaatgattcacttaaggatgttcaggacatgtcactta |
192 |
Q |
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| T |
15800735 |
ctccaggagacgatataactgtcgaccagtcattcaatgattcacttaaagacgtgcaggacatgtctctta |
15800806 |
T |
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