View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_5 (Length: 435)
Name: NF15188_low_5
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 31798702 - 31798289
Alignment:
| Q |
1 |
atgacaaagccactcaccatgtgacttgcaatctagttttgttttattttatttataacaaaggacacactattttgatgctattgttatttgcaatgaa |
100 |
Q |
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| T |
31798702 |
atgacaaagccactcaccatgtgacttgcaatctagttttgttttattttat----aacaaaggacacgttattttgatgctattgttatttgcaatgaa |
31798607 |
T |
|
| Q |
101 |
gagggtagatcatttttaaaatgnnnnnnnaatcattggtgtaacgtatccaataattttgtttatggttaatttttgttcgagaatccggctgatcatc |
200 |
Q |
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| T |
31798606 |
gaaggtagatcatttttaaaatgtttttttaatcattggtgtaacgtatccaataattttgtttatggctaacttttgttcgagaatccggctgatcatc |
31798507 |
T |
|
| Q |
201 |
tttaatgttacataataatgttttttccatccacaaagttcgaatttgagatcttacttaagaggtttaagttaagtttcacgcgaaccaatgtaatgca |
300 |
Q |
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| T |
31798506 |
tttaatgttacataataatattttttccatccacaaagttccaatttgagatcttacttaagggatttaagttaagtttcacgcgaaccaatgtaatgta |
31798407 |
T |
|
| Q |
301 |
actttggtaaagcatccctaaaactttggtaatataacttaaatgaaatcttctcacataatcatannnnnnncatctacaaagttcgaatatgagatct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31798406 |
actttggtaaagcatccctaaaactttggtaatataacttaaatgaagtcttctcacataatcatatttttttcatctacaaagttcgaatatgagatct |
31798307 |
T |
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| Q |
401 |
tacttaagggatccgagt |
418 |
Q |
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||||||||| |||||||| |
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| T |
31798306 |
tacttaaggaatccgagt |
31798289 |
T |
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