View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_6 (Length: 406)
Name: NF15188_low_6
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 6868478 - 6868729
Alignment:
| Q |
20 |
agctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagagataatttgtttggtggagtatgcaaagtgattatg |
119 |
Q |
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| T |
6868478 |
agctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccatagaggaaattggtttggtggagtatgcaaagtgattatg |
6868577 |
T |
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| Q |
120 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
219 |
Q |
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| T |
6868578 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
6868677 |
T |
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| Q |
220 |
ggcataaaaatggctctgaggaaaagaatcaaatcaaataaaataacatacct |
272 |
Q |
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| T |
6868678 |
ggc-taaaaatggctctgaggaaaagaatcaaatcaaatcaaataacatacct |
6868729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 6868728 - 6868808
Alignment:
| Q |
313 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttcatctc |
393 |
Q |
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| T |
6868728 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttgatctc |
6868808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 240 - 387
Target Start/End: Complemental strand, 47150072 - 47149928
Alignment:
| Q |
240 |
gaaaagaatcaaatcaaataaaataacatacctgagctagaaacgttggtggttccagatgaataagctatttctccagaacctgttgttattgttaacg |
339 |
Q |
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| T |
47150072 |
gaaatgaatcaaatcaaagaaaataacatacctgagctagaaacgttagtgtttccagatgaagaagctatttctccagaacccattg---ttgttaatg |
47149976 |
T |
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| Q |
340 |
cactaaagattgaatcttcactattgggtaagcaatatattcgatttt |
387 |
Q |
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| T |
47149975 |
cactaaaaattgaatctttactattggataagcaatatcttcgatttt |
47149928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 14080121 - 14080018
Alignment:
| Q |
120 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
219 |
Q |
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| T |
14080121 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14080033 |
T |
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| Q |
220 |
ggcataaaaatggct |
234 |
Q |
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| T |
14080032 |
ggcatcaaaatggct |
14080018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 14390149 - 14390046
Alignment:
| Q |
120 |
tggtgtgtttaataatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgtttt |
219 |
Q |
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| T |
14390149 |
tggtgtgtttaataatggttgtgtataagttcaacc---cttatcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgtttt |
14390061 |
T |
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| Q |
220 |
ggcataaaaatggct |
234 |
Q |
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| T |
14390060 |
ggcatcaaaatggct |
14390046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 14080288 - 14080228
Alignment:
| Q |
20 |
agctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
80 |
Q |
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||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
14080288 |
agctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14080228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 14390316 - 14390256
Alignment:
| Q |
20 |
agctggtttgagtaggttgtgagtgtaaggaagaaacgttgccgttgagaagagaagccat |
80 |
Q |
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| T |
14390316 |
agctggtttgagtgggttgtgggtgtaaggaagaaacgctgccgttgagaagagaagccat |
14390256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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