View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15188_low_9 (Length: 350)
Name: NF15188_low_9
Description: NF15188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15188_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 7140499 - 7140173
Alignment:
| Q |
18 |
acaacgcgcattcattcatttttgtcatcatcatatacacatactta-gatattttctcctnnnnnnnnccagaagaagcaagaagacgaatctgttaat |
116 |
Q |
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| T |
7140499 |
acaacgcgcattcattcatttttgtcatcatcatatacacacacttaagatattttctcctaaaaaaaaccagaagaagcaagaagacgaatctgttaat |
7140400 |
T |
|
| Q |
117 |
cagatctccgaagaagaagatgatgatgttcgatcagcaacaaccacatcaacaagataaacgaggctacacaagcgtgaaaagagatgaagctgaattg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140399 |
cagatctccgaagaagaagatgatgatgttcgatcagcaaccaccacatcaacaagataaacgaggctacacaagcgtgaaaagagatgaagctgaattg |
7140300 |
T |
|
| Q |
217 |
gacatcgaatctggagaaaccctctacccaggtctctccctcggtgaaaatcaactccgttggggtttcatccgtaaagtctacggaatcctctccgctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7140299 |
gacatcgaatctggagaaaccctctacccaggtctctccctcggtgaaaatcaactccgttggggtttcatccgtaaagtctacggaatcctctccgctc |
7140200 |
T |
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| Q |
317 |
agatcctcttaaccaccatcgtctctg |
343 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7140199 |
agatcctcttaaccaccatcgtctctg |
7140173 |
T |
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