View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15189_high_1 (Length: 471)

Name: NF15189_high_1
Description: NF15189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15189_high_1
NF15189_high_1
[»] chr6 (2 HSPs)
chr6 (179-451)||(26235465-26235733)
chr6 (79-114)||(26235365-26235400)
[»] chr1 (3 HSPs)
chr1 (179-426)||(26263724-26263968)
chr1 (267-422)||(26513615-26513772)
chr1 (356-421)||(12217006-12217071)
[»] chr2 (4 HSPs)
chr2 (278-451)||(17119155-17119327)
chr2 (182-404)||(29687646-29687865)
chr2 (274-426)||(37120515-37120667)
chr2 (193-386)||(43360745-43360936)
[»] chr4 (4 HSPs)
chr4 (298-426)||(51748999-51749127)
chr4 (182-426)||(52418756-52418997)
chr4 (179-332)||(55882031-55882181)
chr4 (273-309)||(12698989-12699025)
[»] chr8 (4 HSPs)
chr8 (274-426)||(43218075-43218227)
chr8 (179-426)||(26131748-26131992)
chr8 (274-426)||(13173266-13173418)
chr8 (274-426)||(41417846-41417999)
[»] chr3 (2 HSPs)
chr3 (277-426)||(20251388-20251537)
chr3 (261-426)||(7642644-7642809)
[»] chr5 (2 HSPs)
chr5 (179-426)||(16043385-16043629)
chr5 (274-426)||(8987086-8987238)
[»] scaffold0093 (1 HSPs)
scaffold0093 (179-426)||(16279-16523)
[»] chr7 (2 HSPs)
chr7 (193-346)||(8790614-8790767)
chr7 (193-387)||(44036321-44036515)
[»] scaffold0112 (1 HSPs)
scaffold0112 (306-426)||(34482-34602)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 179 - 451
Target Start/End: Original strand, 26235465 - 26235733
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||||| |||    
T  26235465 tagcatttcattaataata---agagagtttatacaataaagtacatgataataaatattgagactaacggataaagcggctactccagcaaagatatga 26235561  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctg 378  Q
    ||||||||||||  |||| |||||||||||| |  ||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||| ||    
T  26235562 gctacctcatttacttgtcgtctattgaactcggttttagagtttgagaagtgtatattgaagagactttaacatgttgaaatcacttgtctaaattatg 26235661  T
Q  379 taatatcaactcgacgatgatggaagatgtctgttgtaatctttgaatataaaggcaaagttgacgttgtcaa 451  Q
    || |||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  26235662 tagtatcaactcgacgatggtggaagatgtctgttgtaatctttaaata-caaggcaaagttgacgttgtcaa 26235733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 26235365 - 26235400
Alignment:
Q  79 aaggaaaaaggtgtcttattttgatagacctaattg 114  Q
    ||||||||||||||||||||||||||||||||||||    
T  26235365 aaggaaaaaggtgtcttattttgatagacctaattg 26235400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 179 - 426
Target Start/End: Original strand, 26263724 - 26263968
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   |||||||||||||||||| ||||| ||||||||| | ||  ||||  || ||| ||||  || | || |||| |||||    
T  26263724 tagcatttcattaataata---agagagtttatacaataaggtataagataataaacagcggaactagtggttaatgcggcaacccaagaaaaggtgtga 26263820  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctg 378  Q
     ||||||||||||||||| || | ||||||| ||| |||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||| |||||||     
T  26263821 actacctcatttgtttgtcgtgtgttgaactcgaccttagagtttgagaagtgtgtgttgaaaagactccgacatgctgaaattacttgtccaaattcta 26263920  T
Q  379 taatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    ||| ||||||  ||||||| ||||||  |||| |||||||||||||||    
T  26263921 taacatcaacctgacgatggtggaaggcgtctattgtaatctttgaat 26263968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 422
Target Start/End: Complemental strand, 26513772 - 26513615
Alignment:
Q  267 gcaaagatgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaaga--cttcaacatattgaaatcac 364  Q
    |||| |||||||||||||||| |||||||| || |||| |||| ||  |||||||||||||| |||||  | || |||  |||| | || ||||||||||    
T  26513772 gcaaggatgtgagctacctcaattgtttgtcgtgtattaaactcgatcttagagtttgagaaatgtgtggtaaagagactcttccatatgttgaaatcac 26513673  T
Q  365 ttgtctaaattctgtaatatcaactcgacgatgatggaagatgtctgttgtaatcttt 422  Q
    |||   |||||  ||||  | ||| ||  |||||||||||| ||||||||||||||||    
T  26513672 ttgctcaaatttggtaacgtaaacccggtgatgatggaagacgtctgttgtaatcttt 26513615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 12217006 - 12217071
Alignment:
Q  356 tgaaatcacttgtctaaattctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctt 421  Q
    |||||||||||| | ||||| ||||| |||||| |||||||| |||||| ||||| ||||||||||    
T  12217006 tgaaatcacttgaccaaattttgtaacatcaacccgacgatggtggaaggtgtctattgtaatctt 12217071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 278 - 451
Target Start/End: Complemental strand, 17119327 - 17119155
Alignment:
Q  278 agctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattct 377  Q
    |||||||||||||| |||| | || ||||||| ||| ||||||||||||||||||| |||||| ||||| | |||| ||||||||||||||| |||||||    
T  17119327 agctacctcatttgattgtcgcctgttgaactcgaccttagagtttgagaagtgtgaattgaagagactccgacatgttgaaatcacttgtccaaattct 17119228  T
Q  378 gtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaatataaaggcaaagttgacgttgtcaa 451  Q
    |||| ||||||  ||||||  ||||||  |||||||||||||||||||| | ||| |||| | |||||||||||    
T  17119227 gtaacatcaacctgacgattgtggaaggcgtctgttgtaatctttgaatct-aagacaaaatcgacgttgtcaa 17119155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 404
Target Start/End: Original strand, 29687646 - 29687865
Alignment:
Q  182 catttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtgagct 281  Q
    ||||||||||||||||   |||||||||||||||  | ||| |||||||||||||  | ||||||||| ||| ||||  || ||||||| | ||||||||    
T  29687646 catttcattaataata---agagagtttatacaacgaggtacacgataataaatagtgggactaacggttaatgcggcaaccccagcaagggtgtgagct 29687742  T
Q  282 acctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaa 381  Q
    | ||||||||||||| |  |  | || | ||| |||||||||||||||||||| ||||||||||||   |||  |||||| ||||||| |||||| ||||    
T  29687743 atctcatttgtttgtcgcttgctaaattcgaccttagagtttgagaagtgtgtgttgaaaagactttggcatgctgaaattacttgtccaaattccgtaa 29687842  T
Q  382 tatcaactcgacgatgatggaag 404  Q
     ||||||  ||||||| ||||||    
T  29687843 catcaacctgacgatggtggaag 29687865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 37120515 - 37120667
Alignment:
Q  274 tgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaa 373  Q
    |||||||||||||||||| ||||   || || |||| ||| |||||||||||||||| |||||| || |||||   ||||  |||||||||||| | |||    
T  37120515 tgtgagctacctcatttgcttgtctcctgttaaactcgaccttagagtttgagaagtttgtattaaagagactctgacatgctgaaatcacttggccaaa 37120614  T
Q  374 ttctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    |||||||| |||||  |||||||| |  |||   |||| ||||||||||||||    
T  37120615 ttctgtaacatcaatccgacgatggttaaaggcatctgctgtaatctttgaat 37120667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 386
Target Start/End: Original strand, 43360745 - 43360936
Alignment:
Q  193 taatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtgagctacctcatttgt 292  Q
    ||||| ||||||||||| |||||  |  || | |||||||||||| | ||||| ||||||| ||||  || | ||||||| |||||| | ||| |||||     
T  43360745 taataataagagagtttgtacaacgagatacatgataataaatattgggactaccggataatgcggcaaccctagcaaaggtgtgagttgccttatttgc 43360844  T
Q  293 ttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaatatca 386  Q
    |||| |  | ||||||| ||  ||||||||| |||| |||||  |||| |||||  |||||  |||||||| ||||||||||| ||||||||||    
T  43360845 ttgtcgcatgttgaactcgatcttagagtttaagaaatgtgt--tgaagagactctaacatgctgaaatcatttgtctaaattttgtaatatca 43360936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 51749127 - 51748999
Alignment:
Q  298 gtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaatatcaactcgacgatg 397  Q
    |||| ||||||| ||| |||||||||||||||||||| ||||||||||| | ||||  |||||||||||||| ||||||| ||| ||||||| |||||||    
T  51749127 gtctgttgaactcgaccttagagtttgagaagtgtgtgttgaaaagactccgacatgctgaaatcacttgtccaaattctataacatcaacttgacgatg 51749028  T
Q  398 atggaagatgtctgttgtaatctttgaat 426  Q
     |||||| ||||| |||||||||||||||    
T  51749027 gtggaaggtgtctattgtaatctttgaat 51748999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 426
Target Start/End: Complemental strand, 52418997 - 52418756
Alignment:
Q  182 catttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtgagct 281  Q
    ||||||||||||||||   |||||||||||||||||| ||| |||||||||||||  | ||||| ||| ||| ||||  || | ||||| | ||| ||||    
T  52418997 catttcattaataata---agagagtttatacaataaggtacacgataataaataatgggactagcggttaatgcggcaaccctagcaagggtgtaagct 52418901  T
Q  282 acctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaa 381  Q
    |||||||||  |||| | || ||||||| ||| |||||||||||||||||||| |||||||||||     ||  |||||| || |||| |||||||||||    
T  52418900 acctcatttacttgtcgcctgttgaactcgaccttagagtttgagaagtgtgtgttgaaaagactctggaatgctgaaattacgtgtccaaattctgtaa 52418801  T
Q  382 tatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
     ||||||   |||||||||||||  |||| | |||||||||||||    
T  52418800 catcaacctaacgatgatggaaggcgtctatagtaatctttgaat 52418756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 332
Target Start/End: Original strand, 55882031 - 55882181
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   |||||||||||||||  | ||||||| |||||||||  | ||||| ||| ||| ||||  || || |||| | |||||    
T  55882031 tagcatttcattaataata---agagagtttatacaacgaggtatacggtaataaatagtgggactagcggttaatgcggcaaccccggcaagggtgtga 55882127  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgt 332  Q
    |||||||||||||||||| | || ||||||| ||| | ||| ||||||||||||    
T  55882128 gctacctcatttgtttgtcgcctgttgaactcgacctcagaatttgagaagtgt 55882181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 309
Target Start/End: Original strand, 12698989 - 12699025
Alignment:
Q  273 atgtgagctacctcatttgtttgttgtctattgaact 309  Q
    |||||||||||||||||||||||| |||||| |||||    
T  12698989 atgtgagctacctcatttgtttgtcgtctatagaact 12699025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 43218075 - 43218227
Alignment:
Q  274 tgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaa 373  Q
    |||||||||||||||||| |||| | || ||||||| ||| |||||||||||||||||||| |||||||||||    |||  |||||| ||||||| |||    
T  43218075 tgtgagctacctcatttgcttgtcgcctgttgaactcgaccttagagtttgagaagtgtgtgttgaaaagactctggcatgctgaaattacttgtccaaa 43218174  T
Q  374 ttctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    |||||||| ||||||  ||||||||||||||  |||| ||||||| |||||||    
T  43218175 ttctgtaacatcaacctgacgatgatggaaggcgtctattgtaatatttgaat 43218227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 426
Target Start/End: Complemental strand, 26131992 - 26131748
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   || ||||| ||||||  | ||| |||||||||||||  | ||||| ||| ||| ||||  || ||||||| | |||||    
T  26131992 tagcatttcattaataata---agtgagttaatacaacgaggtacacgataataaatagtgggactagcggttaatgcggcaaccccagcaagggtgtga 26131896  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctg 378  Q
    ||||||||||||  |||| | || ||||||| ||| |||||||||||||||| ||| |||||||||||    |||  |||||| || |||| |||||| |    
T  26131895 gctacctcatttccttgtcgcctgttgaactcgaccttagagtttgagaagtatgtgttgaaaagactctggcatgctgaaattacctgtccaaattccg 26131796  T
Q  379 taatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    ||| ||||||  ||||||| ||||||  |||| |||||||||||||||    
T  26131795 taacatcaacctgacgatggtggaaggcgtctattgtaatctttgaat 26131748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 426
Target Start/End: Complemental strand, 13173418 - 13173266
Alignment:
Q  274 tgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaa 373  Q
    |||||||||  |||||||||||| |||| |||||||     |||||||||||||||||||||||||||||| ||| ||||  |||||||||| ||| | |    
T  13173418 tgtgagctatttcatttgtttgtcgtctgttgaactcatacttagagtttgagaagtgtgtattgaaaagaattcgacatgctgaaatcactagtccata 13173319  T
Q  374 ttctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    || ||||| ||| || ||| |||| ||||||  ||||||||||||||||||||    
T  13173318 ttttgtaacatcgacccgatgatggtggaaggcgtctgttgtaatctttgaat 13173266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 41417846 - 41417999
Alignment:
Q  274 tgtgagctacctcatttgtttgttgtctattgaa-cttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaa 372  Q
    |||||||||||||||||| ||||   || || || || ||| |||||||||||||||||||| ||||| |||||    |||  |||||||||||| ||||    
T  41417846 tgtgagctacctcatttgcttgtctcctgttaaaactcgaccttagagtttgagaagtgtgtgttgaagagactctggcatgctgaaatcacttggctaa 41417945  T
Q  373 attctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    ||| ||||| ||||| ||||||||| |  |||   | |||||||||||||||||    
T  41417946 attttgtaacatcaattcgacgatggttaaaggcatttgttgtaatctttgaat 41417999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 277 - 426
Target Start/End: Complemental strand, 20251537 - 20251388
Alignment:
Q  277 gagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattc 376  Q
    |||||||||| |||| |||| | |||||||||| ||| |||||||||||||||||||| ||||||||||     |||  | |||| ||||||| ||||||    
T  20251537 gagctacctcctttgcttgtcgcctattgaactcgaccttagagtttgagaagtgtgttttgaaaagacgctggcatgctaaaattacttgtccaaattc 20251438  T
Q  377 tgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    ||||| ||||||  ||||||||||||||  |||| |||||||||||||||    
T  20251437 tgtaacatcaacctgacgatgatggaaggcgtctattgtaatctttgaat 20251388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 7642644 - 7642809
Alignment:
Q  261 actccagcaaagatgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaa 360  Q
    |||||| ||| | ||||||||| |||||||| ||||  | | |||||||| || |||||||||||||||| ||| ||||| ||||||| ||||| |||||    
T  7642644 actccaacaagggtgtgagctatctcatttgcttgtcatatgttgaacttaaccttagagtttgagaagtatgtgttgaagagacttcgacatactgaaa 7642743  T
Q  361 tcacttgtctaaattctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    | ||||||| ||||| ||||| |||||   || |||  ||||||| ||||||| ||||||||||||    
T  7642744 ttacttgtccaaattttgtaacatcaaactgatgatagtggaagacgtctgttataatctttgaat 7642809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 179 - 426
Target Start/End: Complemental strand, 16043629 - 16043385
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   |||||||||||||||  | ||| | |||||| ||  | | ||||||| ||||| |||   || | ||||| | |||||    
T  16043629 tagcatttcattaataata---agagagtttatacaacgaggtacatgataatgaaatttgggactaacagataatgcgacaaccctagcaagggtgtga 16043533  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctg 378  Q
    ||||||||||||| |||| |  | || || | ||| |||||||||||||| ||| |  | |||||||||| ||||  | |||||||||| |||||||| |    
T  16043532 gctacctcatttggttgtcgcatgttaaaatcgacattagagtttgagaaatgtatggtaaaaagacttcgacattctaaaatcacttgcctaaattcag 16043433  T
Q  379 taatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    |||  |||||  |||||||||||||| |||||||| ||||||||||||    
T  16043432 taacgtcaacctgacgatgatggaaggtgtctgttttaatctttgaat 16043385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 426
Target Start/End: Original strand, 8987086 - 8987238
Alignment:
Q  274 tgtgagctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaa 373  Q
    |||||||||||||| ||| |||||||   |||||||  |  ||  |||||||||||||||| ||||||||||| |  |||  |||||| ||||||| |||    
T  8987086 tgtgagctacctcagttgcttgttgttcgttgaactcaatcttcaagtttgagaagtgtgtgttgaaaagactccggcatgctgaaattacttgtccaaa 8987185  T
Q  374 ttctgtaatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    |||||||| ||||||   |||||| ||||||  |||| |||||||||||||||    
T  8987186 ttctgtaacatcaacctcacgatggtggaaggcgtctattgtaatctttgaat 8987238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 426
Target Start/End: Original strand, 16279 - 16523
Alignment:
Q  179 tagcatttcattaataatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtga 278  Q
    |||||||||||||||||||   |||||||||||||||  ||||| | |||||||||||| | |||||   ||||| | ||  || ||| ||| | ||||     
T  16279 tagcatttcattaataata---agagagtttatacaacgaagtacatgataataaatattgggactagttgataatgtggcaaccccaacaagggtgtgt 16375  T
Q  279 gctacctcatttgtttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctg 378  Q
    ||||||| ||||| ||||    | || |||| ||| |||||||||||||||| ||| ||||| |||||  | |||  ||||||||||||  |||||||||    
T  16376 gctacctgatttgcttgtctcttcttaaactcgaccttagagtttgagaagtttgtgttgaagagactctagcatgatgaaatcacttggataaattctg 16475  T
Q  379 taatatcaactcgacgatgatggaagatgtctgttgtaatctttgaat 426  Q
    ||| ||||| ||||||||| |  |||   |||||||||||||||||||    
T  16476 taacatcaattcgacgatggttaaaggcatctgttgtaatctttgaat 16523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 346
Target Start/End: Complemental strand, 8790767 - 8790614
Alignment:
Q  193 taatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtgagctacctcatttgt 292  Q
    ||||| |||||||||||||||||  | ||||| |||||||||||| | ||||| | ||||| | ||  ||  |||||| | ||||||||||||||||||     
T  8790767 taataataagagagtttatacaacgaggtatatgataataaatattgggactagctgataatgtggcaacctcagcaagggtgtgagctacctcatttgc 8790668  T
Q  293 ttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagact 346  Q
    ||||   || || |||| ||| ||||| |||||||| ||||| ||||| |||||    
T  8790667 ttgtctcctgttaaactcgaccttagaatttgagaaatgtgtgttgaagagact 8790614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 387
Target Start/End: Original strand, 44036321 - 44036515
Alignment:
Q  193 taatagtaagagagtttatacaataaagtatacgataataaatatcgagactaacggataaagcggttactccagcaaagatgtgagctacctcatttgt 292  Q
    ||||| ||||| ||||||||||| ||   | |||||||||||||| | || |||| ||||| | ||  |  ||| ||| | |||||||||||||||||||    
T  44036321 taataataagaaagtttatacaacaagacacacgataataaatattgggattaactgataatgtggcaatcccatcaagggtgtgagctacctcatttgt 44036420  T
Q  293 ttgttgtctattgaacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaatatcaa 387  Q
    || ||   | || |||| ||| ||||||||||||||||||||  |||| |||||    |||  |||||||||||| | ||||||| ||| |||||    
T  44036421 ttatttcatgttaaactcgaccttagagtttgagaagtgtgtgatgaagagactctggcatgctgaaatcacttggccaaattctataacatcaa 44036515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 34602 - 34482
Alignment:
Q  306 aacttgactttagagtttgagaagtgtgtattgaaaagacttcaacatattgaaatcacttgtctaaattctgtaatatcaactcgacgatgatggaaga 405  Q
    |||| ||| ||| |||||||||||||||| ||||| |||||    |||  |||||||||||| ||| ||||||||| ||||| ||||||||| |  |||     
T  34602 aactcgaccttaaagtttgagaagtgtgtgttgaagagactctggcatgctgaaatcacttggctagattctgtaacatcaattcgacgatggttaaagg 34503  T
Q  406 tgtctgttgtaatctttgaat 426  Q
      |||||||||||||||||||    
T  34502 catctgttgtaatctttgaat 34482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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